Bump scipy from 1.5.4 to 1.10.0 #723
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: PyRate CI | |
on: | |
pull_request: | |
branches: | |
- 'master' | |
push: | |
branches: | |
- '**' | |
jobs: | |
build: | |
if: ${{ ! (contains(github.event.head_commit.message, 'ci skip') || contains(github.event.head_commit.message, 'skip ci'))}} | |
runs-on: ubuntu-18.04 | |
name: Python ${{ matrix.python }} | |
strategy: | |
matrix: | |
include: | |
- build: 1 | |
python-version: "3.7" | |
GDALVERSION: "3.0.2" | |
PROJVERSION: "6.2.1" | |
- build: 2 | |
python-version: "3.7" | |
GDALVERSION: "3.0.4" | |
PROJVERSION: "6.1.1" | |
- build: 3 | |
python-version: "3.8" | |
GDALVERSION: "3.0.4" | |
PROJVERSION: "6.1.1" | |
- build: 4 | |
python-version: "3.9" | |
GDALVERSION: "3.0.4" | |
PROJVERSION: "6.3.2" | |
env: | |
PIP_WHEEL_DIR: "/home/runner/.cache/pip/wheels" | |
PIP_FIND_LINKS: "file:///home/runner/.cache/pip/wheels" | |
GDALINST: "/home/runner/gdalinstall" | |
GDALBUILD: "/home/runner/gdalbuild" | |
GDALVERSION: ${{ matrix.GDALVERSION }} | |
PROJINST: "/home/runner/gdalinstall" | |
PROJBUILD: "/home/runner/projbuild" | |
PROJVERSION: ${{ matrix.PROJVERSION }} | |
PYTHONVERSION: ${{ matrix.python-version }} | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Cache multiple paths | |
uses: actions/cache@v2 | |
with: | |
path: | | |
/home/runner/gdalinstall | |
key: ${{ runner.os }}-cache-GDAL-${{ matrix.GDALVERSION }}-proj-${{ matrix.PROJVERSION }} | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Common set up ${{ matrix.python-version }} | |
run: | | |
sudo apt update | |
sudo apt upgrade | |
python -m pip install -U pip wheel setuptools==58.0 | |
- name: Install packages including openmpi | |
if: env.PYTHONVERSION != '3.9' | |
run: sudo apt install libhdf5-serial-dev libnetcdf13 libatlas-base-dev gfortran openmpi-bin libopenmpi-dev | |
- name: Install packages except openmpi libraries | |
if: env.PYTHONVERSION == '3.9' | |
run: sudo apt install libhdf5-serial-dev libnetcdf13 libatlas-base-dev gfortran | |
- name: Install proj ${{matrix.PROJVERSION}} | |
run: | | |
echo "PATH=$GDALINST/gdal-$GDALVERSION/bin:$PATH" >> $GITHUB_ENV | |
echo "LD_LIBRARY_PATH=$GDALINST/gdal-$GDALVERSION/lib:$LD_LIBRARY_PATH" >> $GITHUB_ENV | |
source ./scripts/ci_proj_install.sh | |
- name: Install GDAL ${{matrix.GDALVERSION}} | |
run: | | |
echo "GDAL_DATA=$GDALINST/gdal-$GDALVERSION/share/gdal" >> $GITHUB_ENV | |
echo "PROJ_LIB=$GDALINST/gdal-$GDALVERSION/share/proj" >> $GITHUB_ENV | |
echo "LDFLAGS=-L$GDALINST/gdal-$GDALVERSION/lib -Wl,-rpath,$GDALINST/gdal-$GDALVERSION/lib" >> $GITHUB_ENV | |
source ./scripts/ci_gdal_install.sh | |
- name: Python ${{ matrix.python-version }} with MPI | |
if: env.PYTHONVERSION != '3.9' | |
run: | | |
python setup.py install | |
rm -rf Py_Rate.egg-info # remove the local egg | |
echo "PYTHONPATH=$(pwd):$PYTHONPATH" >> $GITHUB_ENV | |
chmod 444 tests/test_data/small_test/tif/geo_070709-070813_unw.tif # makes the file readonly, used in a test | |
pip install -r requirements-dev.txt -r requirements-test.txt | |
- name: Python ${{ matrix.python-version }} without MPI | |
if: env.PYTHONVERSION == '3.9' | |
run: | | |
python setup.py install | |
rm -rf Py_Rate.egg-info # remove the local egg | |
echo "PYTHONPATH=$(pwd):$PYTHONPATH" >> $GITHUB_ENV | |
chmod 444 tests/test_data/small_test/tif/geo_070709-070813_unw.tif # makes the file readonly, used in a test | |
pip install -r requirements-test.txt | |
- name: Test Pyrate in Python ${{ matrix.python-version }} with MPI | |
if: env.PYTHONVERSION != '3.9' | |
run: | | |
pytest tests/ -m "slow" | |
mpirun -n 3 pytest tests/test_shared.py -k test_tiles_split -s | |
pytest --cov-config=.coveragerc --cov-report term-missing:skip-covered --cov=pyrate tests/ -m "not slow" | |
env: | |
OMP_NUM_THREADS: 1 | |
- name: Test Pyrate in Python ${{ matrix.python-version }} without MPI | |
if: env.PYTHONVERSION == '3.9' | |
run: | | |
pytest tests/ -m "not mpi and slow" | |
pytest --cov-config=.coveragerc --cov-report term-missing:skip-covered --cov=pyrate tests/ -m "not slow and not mpi" | |
env: | |
OMP_NUM_THREADS: 1 | |