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Example Queries
Gaurav Vaidya edited this page Sep 2, 2022
·
10 revisions
{
"message": {
"query_graph": {
"nodes": {
"n0": {
"categories": ["biolink:GeneOrGeneProduct"]
},
"n1": {
"categories": ["biolink:AnatomicalEntity"],
"ids": ["GO:0005634"]
}
},
"edges": {
"e0": {
"subject": "n0",
"object": "n1",
"predicates": ["biolink:part_of"]
}
}
}
}
}Curl command for the query above:
curl -X POST "https://cam-kp-api.renci.org/1.3.0/query?limit=10" -H "accept: application/json" -H "Content-Type: application/json" -d "{\"message\":{\"query_graph\":{\"nodes\":{\"n0\":{\"categories\":[\"biolink:GeneOrGeneProduct\"]},\"n1\":{\"categories\":[\"biolink:AnatomicalEntity\"],\"ids\":[\"GO:0005634\"]}},\"edges\":{\"e0\":{\"subject\":\"n0\",\"object\":\"n1\",\"predicates\":[\"biolink:part_of\"]}}}}}"
The 'limit' parameter above is an optional parameter that is not a part of the current TRAPI standards.
The response should be similar to:
{
"message": {
"query_graph": {
"nodes": {
"n0": {
"categories": [
"biolink:GeneOrGeneProduct"
]
},
"n1": {
"ids": [
"GO:0005634"
],
"categories": [
"biolink:AnatomicalEntity"
]
}
},
"edges": {
"e0": {
"predicates": [
"biolink:part_of"
],
"subject": "n0",
"object": "n1"
}
}
},
"knowledge_graph": {
"nodes": {
"NCBIGene:89780": {
"categories": [
"biolink:BiologicalEntity",
"biolink:Gene",
"biolink:GenomicEntity",
"biolink:MolecularEntity",
"biolink:NamedThing"
]
},
"GO:0005719": {
"categories": []
},
"UniProtKB:O14641": {
"name": "DVL2 Hsap",
"categories": [
"biolink:BiologicalEntity",
"biolink:ChemicalSubstance",
"biolink:GenomicEntity",
"biolink:MolecularEntity",
"biolink:NamedThing",
"biolink:Protein"
]
},
"NCBIGene:6591": {
"categories": [
"biolink:BiologicalEntity",
"biolink:Gene",
"biolink:GenomicEntity",
"biolink:MolecularEntity",
"biolink:NamedThing"
]
},
"GO:0003682": {
"name": "chromatin binding",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:MolecularActivity",
"biolink:NamedThing"
]
},
"UniProtKB:O75084": {
"name": "FZD7 Hsap",
"categories": [
"biolink:BiologicalEntity",
"biolink:ChemicalSubstance",
"biolink:GenomicEntity",
"biolink:MolecularEntity",
"biolink:NamedThing",
"biolink:Protein"
]
},
"GO:0030877": {
"name": "beta-catenin destruction complex",
"categories": [
"biolink:AnatomicalEntity",
"biolink:BiologicalEntity",
"biolink:CellularComponent",
"biolink:NamedThing",
"biolink:OrganismalEntity"
]
},
"GO:0035326": {
"categories": []
},
"NCBIGene:1855": {
"categories": [
"biolink:BiologicalEntity",
"biolink:Gene",
"biolink:GenomicEntity",
"biolink:MolecularEntity",
"biolink:NamedThing"
]
},
"GO:0001085": {
"categories": []
},
"GO:0045295": {
"name": "gamma-catenin binding",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:EnvironmentalProcess",
"biolink:MolecularActivity",
"biolink:NamedThing",
"biolink:PlanetaryEntity"
]
},
"GO:0000977": {
"name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:EnvironmentalProcess",
"biolink:MolecularActivity",
"biolink:NamedThing",
"biolink:PlanetaryEntity"
]
},
"GO:0005925": {
"name": "focal adhesion",
"categories": [
"biolink:AnatomicalEntity",
"biolink:BiologicalEntity",
"biolink:CellularComponent",
"biolink:NamedThing",
"biolink:OrganismalEntity"
]
},
"GO:0005524": {
"name": "ATP binding",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:EnvironmentalProcess",
"biolink:MolecularActivity",
"biolink:NamedThing",
"biolink:PlanetaryEntity"
]
},
"GO:0042803": {
"name": "protein homodimerization activity",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:EnvironmentalProcess",
"biolink:MolecularActivity",
"biolink:NamedThing",
"biolink:PlanetaryEntity"
]
},
"GO:0001078": {
"categories": []
},
"GO:0070412": {
"name": "R-SMAD binding",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:EnvironmentalProcess",
"biolink:MolecularActivity",
"biolink:NamedThing",
"biolink:PlanetaryEntity"
]
},
"GO:0030331": {
"name": "estrogen receptor binding",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:EnvironmentalProcess",
"biolink:MolecularActivity",
"biolink:NamedThing",
"biolink:PlanetaryEntity"
]
},
"UniProtKB:Q9BZK7": {
"name": "TBL1XR1 Hsap",
"categories": [
"biolink:BiologicalEntity",
"biolink:ChemicalSubstance",
"biolink:GenomicEntity",
"biolink:MolecularEntity",
"biolink:NamedThing",
"biolink:Protein"
]
},
"NCBIGene:6907": {
"categories": [
"biolink:BiologicalEntity",
"biolink:Gene",
"biolink:GenomicEntity",
"biolink:MolecularEntity",
"biolink:NamedThing"
]
},
"NCBIGene:2932": {
"categories": [
"biolink:BiologicalEntity",
"biolink:Gene",
"biolink:GenomicEntity",
"biolink:MolecularEntity",
"biolink:NamedThing"
]
},
"GO:0005913": {
"categories": []
},
"GO:0000118": {
"name": "histone deacetylase complex",
"categories": [
"biolink:AnatomicalEntity",
"biolink:BiologicalEntity",
"biolink:CellularComponent",
"biolink:NamedThing",
"biolink:OrganismalEntity"
]
},
"NCBIGene:10076": {
"categories": [
"biolink:BiologicalEntity",
"biolink:Gene",
"biolink:GenomicEntity",
"biolink:MolecularEntity",
"biolink:NamedThing"
]
},
"UniProtKB:Q00604": {
"name": "NDP Hsap",
"categories": [
"biolink:BiologicalEntity",
"biolink:ChemicalSubstance",
"biolink:GenomicEntity",
"biolink:MolecularEntity",
"biolink:NamedThing",
"biolink:Protein"
]
},
"GO:0005109": {
"name": "frizzled binding",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:EnvironmentalProcess",
"biolink:MolecularActivity",
"biolink:NamedThing",
"biolink:PlanetaryEntity"
]
},
"GO:0042393": {
"name": "histone binding",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:EnvironmentalProcess",
"biolink:MolecularActivity",
"biolink:NamedThing",
"biolink:PlanetaryEntity"
]
},
"NCBIGene:8322": {
"categories": [
"biolink:BiologicalEntity",
"biolink:Gene",
"biolink:GenomicEntity",
"biolink:MolecularEntity",
"biolink:NamedThing"
]
},
"GO:0070888": {
"name": "E-box binding",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:EnvironmentalProcess",
"biolink:MolecularActivity",
"biolink:NamedThing",
"biolink:PlanetaryEntity"
]
},
"GO:0019904": {
"name": "protein domain specific binding",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:EnvironmentalProcess",
"biolink:MolecularActivity",
"biolink:NamedThing",
"biolink:PlanetaryEntity"
]
},
"NCBIGene:51176": {
"categories": [
"biolink:BiologicalEntity",
"biolink:Gene",
"biolink:GenomicEntity",
"biolink:MolecularEntity",
"biolink:NamedThing"
]
},
"GO:0009898": {
"name": "cytoplasmic side of plasma membrane",
"categories": [
"biolink:AnatomicalEntity",
"biolink:BiologicalEntity",
"biolink:CellularComponent",
"biolink:NamedThing",
"biolink:OrganismalEntity"
]
},
"UniProtKB:O43623": {
"name": "SNAI2 Hsap",
"categories": [
"biolink:BiologicalEntity",
"biolink:ChemicalSubstance",
"biolink:GenomicEntity",
"biolink:MolecularEntity",
"biolink:NamedThing",
"biolink:Protein"
]
},
"GO:0004674": {
"name": "protein serine/threonine kinase activity",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:EnvironmentalProcess",
"biolink:MolecularActivity",
"biolink:NamedThing",
"biolink:PlanetaryEntity"
]
},
"GO:0048471": {
"name": "perinuclear region of cytoplasm",
"categories": [
"biolink:AnatomicalEntity",
"biolink:BiologicalEntity",
"biolink:CellularComponent",
"biolink:NamedThing",
"biolink:OrganismalEntity"
]
},
"NCBIGene:2535": {
"categories": [
"biolink:BiologicalEntity",
"biolink:Gene",
"biolink:GenomicEntity",
"biolink:MolecularEntity",
"biolink:NamedThing"
]
},
"ECO:0000353": {
"name": "physical interaction evidence used in manual assertion",
"categories": [
"biolink:EvidenceType",
"biolink:InformationContentEntity",
"biolink:NamedThing"
]
},
"GO:0043565": {
"name": "sequence-specific DNA binding",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:EnvironmentalProcess",
"biolink:MolecularActivity",
"biolink:NamedThing",
"biolink:PlanetaryEntity"
]
},
"GO:0042813": {
"name": "Wnt-activated receptor activity",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:EnvironmentalProcess",
"biolink:MolecularActivity",
"biolink:NamedThing",
"biolink:PlanetaryEntity"
]
},
"GO:1904928": {
"name": "coreceptor activity involved in canonical Wnt signaling pathway",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:MolecularActivity",
"biolink:NamedThing"
]
},
"GO:0070411": {
"name": "I-SMAD binding",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:EnvironmentalProcess",
"biolink:MolecularActivity",
"biolink:NamedThing",
"biolink:PlanetaryEntity"
]
},
"UniProtKB:Q9NPG1": {
"name": "FZD3 Hsap",
"categories": [
"biolink:BiologicalEntity",
"biolink:ChemicalSubstance",
"biolink:GenomicEntity",
"biolink:MolecularEntity",
"biolink:NamedThing",
"biolink:Protein"
]
},
"GO:0003714": {
"name": "transcription corepressor activity",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:MolecularActivity",
"biolink:NamedThing"
]
},
"GO:0005829": {
"name": "cytosol",
"categories": [
"biolink:AnatomicalEntity",
"biolink:BiologicalEntity",
"biolink:CellularComponent",
"biolink:NamedThing",
"biolink:OrganismalEntity"
]
},
"GO:0005813": {
"name": "centrosome",
"categories": [
"biolink:AnatomicalEntity",
"biolink:BiologicalEntity",
"biolink:CellularComponent",
"biolink:NamedThing",
"biolink:OrganismalEntity"
]
},
"UniProtKB:P35222": {
"name": "CTNNB1 Hsap",
"categories": [
"biolink:BiologicalEntity",
"biolink:ChemicalSubstance",
"biolink:GenomicEntity",
"biolink:MolecularEntity",
"biolink:NamedThing",
"biolink:Protein"
]
},
"GO:0035064": {
"name": "methylated histone binding",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:EnvironmentalProcess",
"biolink:MolecularActivity",
"biolink:NamedThing",
"biolink:PlanetaryEntity"
]
},
"GO:0045296": {
"name": "cadherin binding",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:EnvironmentalProcess",
"biolink:MolecularActivity",
"biolink:NamedThing",
"biolink:PlanetaryEntity"
]
},
"GO:0070369": {
"name": "beta-catenin-TCF7L2 complex",
"categories": [
"biolink:AnatomicalEntity",
"biolink:BiologicalEntity",
"biolink:CellularComponent",
"biolink:NamedThing",
"biolink:OrganismalEntity"
]
},
"NCBIGene:7855": {
"categories": [
"biolink:BiologicalEntity",
"biolink:Gene",
"biolink:GenomicEntity",
"biolink:MolecularEntity",
"biolink:NamedThing"
]
},
"GO:0019210": {
"name": "kinase inhibitor activity",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:MolecularActivity",
"biolink:NamedThing"
]
},
"NCBIGene:1857": {
"categories": [
"biolink:BiologicalEntity",
"biolink:Gene",
"biolink:GenomicEntity",
"biolink:MolecularEntity",
"biolink:NamedThing"
]
},
"UniProtKB:Q9ULV1": {
"name": "FZD4 Hsap",
"categories": [
"biolink:BiologicalEntity",
"biolink:ChemicalSubstance",
"biolink:GenomicEntity",
"biolink:MolecularEntity",
"biolink:NamedThing",
"biolink:Protein"
]
},
"GO:0047485": {
"name": "protein N-terminus binding",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:EnvironmentalProcess",
"biolink:MolecularActivity",
"biolink:NamedThing",
"biolink:PlanetaryEntity"
]
},
"UniProtKB:P60484": {
"name": "PTEN Hsap",
"categories": [
"biolink:BiologicalEntity",
"biolink:ChemicalSubstance",
"biolink:GenomicEntity",
"biolink:MolecularEntity",
"biolink:NamedThing",
"biolink:Protein"
]
},
"GO:0005125": {
"name": "cytokine activity",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:EnvironmentalProcess",
"biolink:MolecularActivity",
"biolink:NamedThing",
"biolink:PlanetaryEntity"
]
},
"GO:0003678": {
"name": "DNA helicase activity",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:EnvironmentalProcess",
"biolink:MolecularActivity",
"biolink:NamedThing",
"biolink:PlanetaryEntity"
]
},
"GO:0050321": {
"name": "tau-protein kinase activity",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:EnvironmentalProcess",
"biolink:MolecularActivity",
"biolink:NamedThing",
"biolink:PlanetaryEntity"
]
},
"GO:0008013": {
"name": "beta-catenin binding",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:EnvironmentalProcess",
"biolink:MolecularActivity",
"biolink:NamedThing",
"biolink:PlanetaryEntity"
]
},
"UniProtKB:P49841": {
"name": "GSK3B Hsap",
"categories": [
"biolink:BiologicalEntity",
"biolink:ChemicalSubstance",
"biolink:GenomicEntity",
"biolink:MolecularEntity",
"biolink:NamedThing",
"biolink:Protein"
]
},
"GO:0004725": {
"name": "protein tyrosine phosphatase activity",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:EnvironmentalProcess",
"biolink:MolecularActivity",
"biolink:NamedThing",
"biolink:PlanetaryEntity"
]
},
"UniProtKB:Q13467": {
"name": "FZD5 Hsap",
"categories": [
"biolink:BiologicalEntity",
"biolink:ChemicalSubstance",
"biolink:GenomicEntity",
"biolink:MolecularEntity",
"biolink:NamedThing",
"biolink:Protein"
]
},
"ECO:0000314": {
"name": "direct assay evidence used in manual assertion",
"categories": [
"biolink:EvidenceType",
"biolink:InformationContentEntity",
"biolink:NamedThing"
]
},
"GO:0019900": {
"name": "kinase binding",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:EnvironmentalProcess",
"biolink:MolecularActivity",
"biolink:NamedThing",
"biolink:PlanetaryEntity"
]
},
"GO:0031625": {
"name": "ubiquitin protein ligase binding",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:EnvironmentalProcess",
"biolink:MolecularActivity",
"biolink:NamedThing",
"biolink:PlanetaryEntity"
]
},
"NCBIGene:7473": {
"categories": [
"biolink:BiologicalEntity",
"biolink:Gene",
"biolink:GenomicEntity",
"biolink:MolecularEntity",
"biolink:NamedThing"
]
},
"GO:0005578": {
"categories": []
},
"GO:0000978": {
"name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:EnvironmentalProcess",
"biolink:MolecularActivity",
"biolink:NamedThing",
"biolink:PlanetaryEntity"
]
},
"NCBIGene:57680": {
"categories": [
"biolink:BiologicalEntity",
"biolink:Gene",
"biolink:GenomicEntity",
"biolink:MolecularEntity",
"biolink:NamedThing"
]
},
"UniProtKB:Q92729": {
"name": "PTPRU Hsap",
"categories": [
"biolink:BiologicalEntity",
"biolink:ChemicalSubstance",
"biolink:GenomicEntity",
"biolink:MolecularEntity",
"biolink:NamedThing",
"biolink:Protein"
]
},
"UniProtKB:Q92997": {
"name": "DVL3 Hsap",
"categories": [
"biolink:BiologicalEntity",
"biolink:ChemicalSubstance",
"biolink:GenomicEntity",
"biolink:MolecularEntity",
"biolink:NamedThing",
"biolink:Protein"
]
},
"NCBIGene:5728": {
"categories": [
"biolink:BiologicalEntity",
"biolink:Gene",
"biolink:GenomicEntity",
"biolink:MolecularEntity",
"biolink:NamedThing"
]
},
"UniProtKB:Q9UP38": {
"name": "FZD1 Hsap",
"categories": [
"biolink:BiologicalEntity",
"biolink:ChemicalSubstance",
"biolink:GenomicEntity",
"biolink:MolecularEntity",
"biolink:NamedThing",
"biolink:Protein"
]
},
"NCBIGene:1499": {
"categories": [
"biolink:BiologicalEntity",
"biolink:Gene",
"biolink:GenomicEntity",
"biolink:MolecularEntity",
"biolink:NamedThing"
]
},
"GO:0060070": {
"name": "canonical Wnt signaling pathway",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcess",
"biolink:BiologicalProcessOrActivity",
"biolink:NamedThing",
"biolink:Pathway"
]
},
"GO:0008022": {
"name": "protein C-terminus binding",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:EnvironmentalProcess",
"biolink:MolecularActivity",
"biolink:NamedThing",
"biolink:PlanetaryEntity"
]
},
"GO:0000790": {
"categories": []
},
"UniProtKB:P56703": {
"name": "WNT3 Hsap",
"categories": [
"biolink:BiologicalEntity",
"biolink:ChemicalSubstance",
"biolink:GenomicEntity",
"biolink:MolecularEntity",
"biolink:NamedThing",
"biolink:Protein"
]
},
"GO:0019901": {
"name": "protein kinase binding",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:EnvironmentalProcess",
"biolink:MolecularActivity",
"biolink:NamedThing",
"biolink:PlanetaryEntity"
]
},
"UniProtKB:O14640": {
"name": "DVL1 Hsap",
"categories": [
"biolink:BiologicalEntity",
"biolink:ChemicalSubstance",
"biolink:GenomicEntity",
"biolink:MolecularEntity",
"biolink:NamedThing",
"biolink:Protein"
]
},
"NCBIGene:1856": {
"categories": [
"biolink:BiologicalEntity",
"biolink:Gene",
"biolink:GenomicEntity",
"biolink:MolecularEntity",
"biolink:NamedThing"
]
},
"GO:0051717": {
"name": "inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:MolecularActivity",
"biolink:NamedThing"
]
},
"GO:0004438": {
"name": "phosphatidylinositol-3-phosphatase activity",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:MolecularActivity",
"biolink:NamedThing"
]
},
"GO:0004197": {
"name": "cysteine-type endopeptidase activity",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:EnvironmentalProcess",
"biolink:MolecularActivity",
"biolink:NamedThing",
"biolink:PlanetaryEntity"
]
},
"GO:0071944": {
"name": "cell periphery",
"categories": [
"biolink:AnatomicalEntity",
"biolink:BiologicalEntity",
"biolink:CellularComponent",
"biolink:NamedThing",
"biolink:OrganismalEntity"
]
},
"GO:0002020": {
"name": "protease binding",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:EnvironmentalProcess",
"biolink:MolecularActivity",
"biolink:NamedThing",
"biolink:PlanetaryEntity"
]
},
"GO:0043234": {
"categories": []
},
"GO:0070016": {
"name": "armadillo repeat domain binding",
"categories": [
"biolink:BiologicalEntity",
"biolink:BiologicalProcessOrActivity",
"biolink:EnvironmentalProcess",
"biolink:MolecularActivity",
"biolink:NamedThing",
"biolink:PlanetaryEntity"
]
},
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"predicate": "biolink:occurs_in",
"subject": "GO:0043027",
"object": "GO:0005737"
},
"ef62411833063b7461a820810512634656556a1715a56cc7e83302bf3125b8df": {
"predicate": "biolink:occurs_in",
"subject": "GO:0044212",
"object": "GO:0016328"
},
"7939368fd576ad4cd316a11215c7b84e37d66907673dd79acdbe409e6d74d5ff": {
"predicate": "biolink:occurs_in",
"subject": "GO:0005109",
"object": "GO:0031410"
},
"b6300a4a9c1355737e2504c3b630c937b4ff7998b9ce593e880bcd99378935b9": {
"predicate": "biolink:part_of",
"subject": "GO:0034236",
"object": "GO:0060070"
},
"c63c5c8a4f987451fe5bfc27498e511fc920a9da66df999b23cbafb02b0ca206": {
"predicate": "biolink:part_of",
"subject": "GO:0035326",
"object": "GO:0060070"
},
"ee77d53a6386b38caf9e8bc6d83deee4392890f5503a527e95cebcf60f0837b8": {
"predicate": "biolink:occurs_in",
"subject": "GO:1990188",
"object": "GO:0005634"
},
"180e94efa4cfb043155b499fdb125957090482eacd6c652a0194b5cf347e37f3": {
"predicate": "biolink:occurs_in",
"subject": "GO:0001102",
"object": "GO:0005886"
},
"c90aa41455b0870c8f53c38be76c34f285af216c1f108a450d5bf317e1b9cd19": {
"predicate": "biolink:occurs_in",
"subject": "GO:0008022",
"object": "GO:0005719"
},
"a655fa576a0db4a7bcac171dcebefa75b23bac20efefb05ee674a99e67bc8b8f": {
"predicate": "biolink:occurs_in",
"subject": "GO:0030165",
"object": "GO:0009898"
}
}
},
"results": [
{
"node_bindings": {
"n0": [
{
"id": "UniProtKB:P35222"
}
],
"n1": [
{
"id": "GO:0005634"
}
]
},
"edge_bindings": {
"e0": [
{
"id": "6e092c168b8a6527b4fe203e6c0212f00270dbadf64d5ef20bb3f9967739c155"
}
]
}
}
]
},
"status": "Success"
}Note: The response above is obtained when the limit is set to 1. This is done here just for demonstration purpose because the full response without any limit is quite large.
{
"message": {
"query_graph": {
"nodes": {
"n0": {
"categories": ["biolink:BiologicalProcessOrActivity"]
},
"n1": {
"categories": ["biolink:AnatomicalEntity"],
"ids": ["GO:0005737"]
}
},
"edges": {
"e0": {
"subject": "n0",
"object": "n1",
"predicates": ["biolink:occurs_in"]
}
}
}
}
}Curl command for the query above:
curl -X POST "https://cam-kp-api.renci.org/1.3.0/query?limit=10" -H "accept: application/json" -H "Content-Type: application/json" -d "{\"message\":{\"query_graph\":{\"nodes\":{\"n0\":{\"categories\":[\"biolink:BiologicalProcessOrActivity\"]},\"n1\":{\"categories\":[\"biolink:AnatomicalEntity\"],\"ids\":[\"GO:0005737\"]}},\"edges\":{\"e0\":{\"subject\":\"n0\",\"object\":\"n1\",\"predicates\":[\"biolink:occurs_in\"]}}}}}"
3. Find genes causally upstream of the activity of ‘GPR35’, specifically occurring within leukocytes (CL:0000738).
{
"message": {
"query_graph": {
"nodes": {
"n0": {
"categories": ["biolink:GeneOrGeneProduct"]
},
"n1": {
"categories": ["biolink:GeneOrGeneProduct"],
"ids": ["UniProtKB:Q9HC97"]
},
"n2": {
"categories": ["biolink:AnatomicalEntity"],
"ids": ["CL:0000738"]
}
},
"edges": {
"e0": {
"subject": "n0",
"object": "n1",
"predicates": ["biolink:affects_activity_of"]
},
"e1": {
"subject": "n1",
"object": "n2",
"predicates": ["biolink:part_of"]
}
}
}
}
}Curl command for the query above:
curl -X POST "https://cam-kp-api.renci.org/1.3.0/query?limit=10" -H "accept: application/json" -H "Content-Type: application/json" -d "{\"message\":{\"query_graph\":{\"nodes\":{\"n0\":{\"categories\":[\"biolink:GeneOrGeneProduct\"]},\"n1\":{\"categories\":[\"biolink:GeneOrGeneProduct\"],\"ids\":[\"UniProtKB:Q9HC97\"]},\"n2\":{\"categories\":[\"biolink:AnatomicalEntity\"],\"ids\":[\"CL:0000738\"]}},\"edges\":{\"e0\":{\"subject\":\"n0\",\"object\":\"n1\",\"predicates\":[\"biolink:affects_activity_of\"]},\"e1\":{\"subject\":\"n1\",\"object\":\"n2\",\"predicates\":[\"biolink:part_of\"]}}}}}"