Release version 0.6.2

Added

• Savitzky–Golay filtering for curve fitting and plotting

Fixed

• Removed leftover debugging message

Release version 0.6.1

v0.6.1

Version bump to 0.6.1

Release version 0.6.0

Added

• An align subpackage containing image alignment functionality
• Image alignment verification and correction before processing images
• Command line arguments to adjust image alignment strategy and tolerance

Changed

• Growth curves now use a windowed median which should help to smooth the curve
• Updated and improved IdentifiedCollection, now backed by a Dictionary for easier lookup

Fixed

• Various warnings emitted when running the tests
• Images are now correctly converted when creating image animations, fixing buffer errors

Release version 0.5.2

• Removes the temporary fix used when identifying plate centres

Release version 0.5.1

Fixed

• RGB images are correctly handled during colour mode conversion

Release version 0.5.0

Added

• Utilize multiprocessing for grouping and filtering Timepoints to Colonies
• silent command line argument to prevent output to console
• animation command line argument to output
• New class function, from_path, for building an ImageFileCollection

Changed

• Improved plot labels/legends
• plots command line argument replaced with no-plots switch
• multiprocessing command line argument replaced with single-process switch
• Reworked command line arguments, using simplified switches for boolean arguments
• Reworked command line arguments to follow GNU conventions
• Refactored main module
• Improve access model and remove forward typing

Fixed

• Ensure image files are converted to RGB

Release version 0.4.4

Fixed

• Plots are now saved to the correct directory again

Release version 0.4.3

Added

• --version command line argument to display installed package version number
• --image_formats command line argument to display supported image formats
• Package configuration and now consolidated and loaded from a settings module

Changed

• Improved the output from the --help command line argument to make it a little clearer

Release version 0.4.2

Added

• Support for bmp image files

Fixed

• Wrong type reference in colony.colonies_from_timepoints

Changed

• image_file._load_image will now retry once if it fails

Release version 0.4.1

Added

• Dockerfile and utility scripts
• Docker image is now available: https://hub.docker.com/r/erikwhite/colonyscanalyser