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@DIAGNijmegen

Diagnostic Image Analysis Group

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  1. neural-odes-segmentation neural-odes-segmentation Public

    Neural Ordinary Differential Equations for Semantic Segmentation of Individual Colon Glands

    Python 105 27

  2. StreamingCNN StreamingCNN Public

    To train deep convolutional neural networks, the input data and the activations need to be kept in memory. Given the limited memory available in current GPUs, this limits the maximum dimensions of …

    Jupyter Notebook 97 21

  3. pathology-whole-slide-data pathology-whole-slide-data Public

    A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.

    Python 86 24

  4. pathology-streaming-pipeline pathology-streaming-pipeline Public

    Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.

    Python 75 8

  5. pathology-he-auto-augment pathology-he-auto-augment Public

    H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.

    Python 50 7

  6. pathology-hooknet pathology-hooknet Public

    Jupyter Notebook 49 9

Repositories

Showing 10 of 147 repositories
  • pathology-whole-slide-data Public

    A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.

    DIAGNijmegen/pathology-whole-slide-data’s past year of commit activity
    Python 86 Apache-2.0 24 4 0 Updated Jul 12, 2024
  • DIAGNijmegen/pathology-hooknet-tls’s past year of commit activity
    Jupyter Notebook 6 MIT 0 8 0 Updated Jul 11, 2024
  • rse-sagemaker-shim Public

    Adapts algorithms that implement the Grand Challenge inference API for running in SageMaker

    DIAGNijmegen/rse-sagemaker-shim’s past year of commit activity
    Python 1 Apache-2.0 0 2 0 Updated Jul 11, 2024
  • website-content Public

    This repository stores all the content for the diag websites.

    DIAGNijmegen/website-content’s past year of commit activity
    TeX 5 MIT 74 30 (1 issue needs help) 14 Updated Jul 11, 2024
  • picai_prep Public

    Preprocessing 3D medical images and image archives —geared towards prostate cancer detection in MRI.

    DIAGNijmegen/picai_prep’s past year of commit activity
    Python 17 Apache-2.0 5 0 0 Updated Jul 10, 2024
  • Literature Public

    The literature generated and cited by the group

    DIAGNijmegen/Literature’s past year of commit activity
    TeX 0 1 0 0 Updated Jul 10, 2024
  • rse-pyswot Public

    Python implementation of JetBrains/swot

    DIAGNijmegen/rse-pyswot’s past year of commit activity
    Python 1 Apache-2.0 1 0 0 Updated Jul 9, 2024
  • DIAGNijmegen/ACOUSLIC-AI-evaluation-method’s past year of commit activity
    Python 2 Apache-2.0 2 0 0 Updated Jul 8, 2024
  • rse-grand-challenge-forge Public

    Generation of challenge packs

    DIAGNijmegen/rse-grand-challenge-forge’s past year of commit activity
    Python 0 Apache-2.0 0 1 1 Updated Jul 8, 2024
  • picai_baseline Public

    Baseline AI models for 3D csPCa detection/diagnosis in bpMRI

    DIAGNijmegen/picai_baseline’s past year of commit activity
    Python 39 Apache-2.0 19 1 0 Updated Jul 7, 2024