Notes

1. Please read this excerpt from my thesis for a basic understanding of how IXNAnalysis functions.

2. gmailMessage no longer works as of June 2022. Google has permanently banned the use of third-party apps for Gmail sign-in using only the username and password. Therefore, the gmailMessage p-file has been removed from this repo and related error messaging functionality in all batch-preprocessing scripts no longer works.

3. https://www.mathworks.com/matlabcentral/answers/98467-why-do-i-receive-a-couldn-t-open-file-for-writing-error-when-using-imwrite-on-matlab-7-8-r2009a

Acknowledgments

This repo has incorporated the following codes from MathWorks File Exchange:

cprintf (Revision: 1.10) by Yair M. Altman, licensed under the BSD-3

herrorbar by Jos van der Geest, licensed under the BSD-2

References

This toolkit (or its previous versions) was used in the following publications:

Chen, C., et al. "Ectopic activation of the spindle assembly checkpoint signaling cascade reveals its biochemical design." Current Biology 29.1 (2019): 104-119. (Please cite this paper if you used this toolkit in your work)

Banerjee, A., et al. “BubR1 recruitment to the kinetochore via Bub1 enhances Spindle Assembly Checkpoint signaling”. Molecular Biology of the Cell 33.10 (2022): br16.

Chen, C., et al. "The structural flexibility of MAD1 facilitates the assembly of the Mitotic Checkpoint Complex." Nature Communications 14 (2023): 1529.