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Structural variant filtering strategy was developed and discussed here. Some parts are implemented and the remaining parts required implementing a unified filtering method after addition of SV callers and implementation of merging and annotation.
Suggested approach
Add a unified pre and a unified post annotation filters for SVs within the placeholders implemented in BALSAMIC.
Considered alternatives
No response
Deviation
No response
System requirements assessed
Yes, I have reviewed the system requirements
Requirements affected by this story
No response
Risk assessment needed
Needed
Not needed
Risk assessment
No response
SOUPs
No response
Can be closed when
No response
Blockers
No response
Anything else?
No response
The text was updated successfully, but these errors were encountered:
khurrammaqbool
changed the title
[User Story] Unified SV filtering
[User Story] Implementation of a unified pre and post annotation SV filters
Apr 26, 2024
khurrammaqbool
changed the title
[User Story] Implementation of a unified pre and post annotation SV filters
[User Story] Implementation of a unified pre and unified post annotation SV filters
Apr 26, 2024
Need
Structural variant filtering strategy was developed and discussed here. Some parts are implemented and the remaining parts required implementing a unified filtering method after addition of SV callers and implementation of merging and annotation.
Suggested approach
Add a unified pre and a unified post annotation filters for SVs within the placeholders implemented in BALSAMIC.
Considered alternatives
No response
Deviation
No response
System requirements assessed
Requirements affected by this story
No response
Risk assessment needed
Risk assessment
No response
SOUPs
No response
Can be closed when
No response
Blockers
No response
Anything else?
No response
The text was updated successfully, but these errors were encountered: