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Release candidate v2.0-rc2

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@bqminh bqminh released this 27 Mar 14:10
· 8 commits to master since this release
v2.0-rc2
db6696e

Bugfixes:

  • Assertion about Eigen::Success, "transformed Q is symmetric", and "eigenvalues are not positive".
  • Crash with terrace analysis at the end: turned off by default.
  • Rooted input tree is improperly unrooted (reported by Suha Naser).

New features:

  • --subsample and --subsample-seed options to sub-sample a number of partitions.
  • Ability to read a partition nexus file with both DATA and SETS blocks.
  • New set of Q matrices for QMaker manuscript.
  • --gcf and --scf print an annotated nexus tree file .cf.tree.nex viewable in FigTree.
  • Accept bar character in taxon names (requested by @rambaut).
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