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COMBAT-TB model is a Chado inspired graph model for genome annotation.

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COMBAT-TB/combattbmodel

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combattbmodel

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The COMBAT-TB graph model is a Chado-derived graph model for genome annotation.

Overview

The graph model is based on the following Chado modules:

  • CV
  • Sequence
  • Publication

A diagram depicting the Graph model can be found here, with the accompanying documentation here.

Installation

$ virtualenv envname
$ source envname/bin/activate
$ pip install -i https://test.pypi.org/simple/ combattbmodel
$ python
>>> import combattbmodel
>>> combattbmodel.name
'combattbmodel'
>>> from combattbmodel.core import Gene
>>> gene = Gene()
>>> gene.so_id
u'SO:0000704'
>>>