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Note that this code needs an older version of fcutils: https://github.com/FedeClaudi/fcutils/tree/06703a18bcfa6b473ba5f4a80803fdd89e5a52b2

Note that you'll need datajoint=0.12.4.

Setup for Caiman

Currently working of the dev branch of caiman, install with these steps:

Clone repository and switch to dev branch

git clone https://github.com/flatironinstitute/CaImAn.git
cd caiman
git checkout -b 1p_rt
git pull

Crate a conda environemnt install dependencies and then caiman

conda create -n cai python==3.6.4
conda activate cai
pip install -r requirements.txt
pip install -U ipykernel
pip install pyqt5 napari fancylog
pip install . --user

Other packages for behaviour analysis

Requires Behaviour and fcutils packages [written by Federico and available on github], install with:

pip install git+https://github.com/BrancoLab/Behaviour.git --upgrade

pip install git+https://github.com/FedeClaudi/fcutils.git --upgrade