Code to preprocess and analyse fiberphotometry recordings in the Branco Lab.
If you just need to 'use' the fiberphotometry code without editing anything, you can just install it as a python package.
If you don't have one already, start by creating a python environment with python version 3.7.
Then install the fiberphotometry package with
pip install git+https://github.com/BrancoLab/fiberphotometry.git
The package requires additional libraries that can be installed from github with:
pip install git+https://github.com/BrancoLab/Behaviour.git
pip install git+https://github.com/FedeClaudi/fcutils.git
pip install git+https://github.com/BrancoLab/tdmstovideo_converter.git
To edit and contribute to the code, clone this repository to your computer.
To use the cloned code you'll need a python environment that satisfies the same requirements
outlined above, but without fiberphotometry installed as a package.
to be determined...