upgrade rdflib dependency #79
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| name: Test BlueGraph | |
| on: | |
| pull_request: | |
| push: | |
| branches: | |
| - master | |
| - github-action-test | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [ 3.7, 3.8 ] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Get Neo4j from a third party repo and install | |
| run: | | |
| sudo add-apt-repository -y ppa:openjdk-r/ppa | |
| sudo apt-get update | |
| wget -O - https://debian.neo4j.com/neotechnology.gpg.key | sudo apt-key add - | |
| echo 'deb https://debian.neo4j.com stable 5' | sudo tee -a /etc/apt/sources.list.d/neo4j.list | |
| sudo apt-get update | |
| sudo apt-get install neo4j=1:5.18.0 | |
| - name: Download the graph data science lib | |
| run: | | |
| wget https://s3-eu-west-1.amazonaws.com/com.neo4j.graphalgorithms.dist/graph-data-science/neo4j-graph-data-science-2.6.2-standalone.zip | |
| unzip neo4j-graph-data-science-2.6.2-standalone.zip | |
| sudo cp neo4j-graph-data-science-2.6.2.jar /var/lib/neo4j/plugins/ | |
| - name: Add conda to system path | |
| run: | | |
| # $CONDA is an environment variable pointing to the root of the miniconda directory | |
| echo $CONDA/bin >> $GITHUB_PATH | |
| - name: Useful for debugging any issues with conda | |
| run: conda info -a | |
| - name: Update the base env with graph-tool and faiss-gpu installed from conda-forge | |
| run: | | |
| conda install python=${{ matrix.python-version }} | |
| conda env update --file test-environment.yml --name base | |
| - name: Install the rest of the dependencies | |
| run: | | |
| python3 -m pip install .[dev] | |
| - name: Configure the Neo4j database | |
| run: | | |
| sudo neo4j-admin set-initial-password neo4j | |
| echo 'dbms.connector.bolt.listen_address=0.0.0.0:7687' | sudo tee -a /etc/neo4j/neo4j.conf | |
| echo 'dbms.security.procedures.unrestricted=gds.*' | sudo tee -a /etc/neo4j/neo4j.conf | |
| echo 'dbms.security.procedures.whitelist=gds.*' | sudo tee -a /etc/neo4j/neo4j.conf | |
| cat /etc/neo4j/neo4j.conf | |
| - name: Start a db instance and wait (it takes time to start) | |
| run: | | |
| sudo service neo4j restart | |
| sleep 60 | |
| - name: Test with pytest | |
| run: | | |
| pytest --cov=./bluegraph | |
| - name: Upload to codecov | |
| if: ${{matrix.python-version == '3.7'}} | |
| uses: codecov/codecov-action@v1 | |
| with: | |
| fail_ci_if_error: false | |
| files: ./coverage.xml | |
| flags: pytest | |
| name: "bluegraph-py37" |