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@Biomedical-Imaging-Group

Biomedical Imaging Group

The BIG pursues research on the development of new algorithms and mathematical tools for the advanced processing of medical and biological images

Pinned

  1. DeepSplines DeepSplines Public

    A learnable linear spline module (PyTorch)

    Python

  2. GlobalBioIm GlobalBioIm Public

    A unifying Matlab framework for the development of reconstruction algorithms (solving inverse problems) in computational imaging

    MATLAB 77 36

  3. DeconvolutionLab2 DeconvolutionLab2 Public

    Java (ImageJ/Fiji) software package for 3D deconvolution microscopy

    Java 47 15

  4. Generating-Sparse-Processes Generating-Sparse-Processes Public

    Jupyter Notebook 1 1

Repositories

Showing 10 of 18 repositories
  • GlobalBioIm Public

    A unifying Matlab framework for the development of reconstruction algorithms (solving inverse problems) in computational imaging

    Biomedical-Imaging-Group/GlobalBioIm’s past year of commit activity
    MATLAB 77 GPL-3.0 36 8 (1 issue needs help) 0 Updated Jul 17, 2024
  • DeepSplines Public

    A learnable linear spline module (PyTorch)

    Biomedical-Imaging-Group/DeepSplines’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jun 6, 2024
  • IPLABs-distribution-2023 Public
    Biomedical-Imaging-Group/IPLABs-distribution-2023’s past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated May 23, 2024
  • SingleCellClassifier Public

    Single Cell Classifier (SCC) is an ImageJ/Fiji plugin that aims to classify cells based on features related to their nuclei and their neighbors.

    Biomedical-Imaging-Group/SingleCellClassifier’s past year of commit activity
    Jupyter Notebook 1 BSD-3-Clause 1 0 0 Updated Jun 30, 2023
  • Continuous_FRC_SMLM Public

    Computes the Fourier-ring correlation (FRC) in the continuous domain for single molecule localization microscopy (SMLM)

    Biomedical-Imaging-Group/Continuous_FRC_SMLM’s past year of commit activity
    Python 5 MIT 2 0 0 Updated Jun 5, 2023
  • Interactive-Cell-Lineage-Tracer Public

    ImageJ plugin to track and mesure cells. Chiara Toniolo, Daniel Sage

    Biomedical-Imaging-Group/Interactive-Cell-Lineage-Tracer’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Apr 17, 2023
  • mij Public

    MIJ Matlab-ImageJ connector

    Biomedical-Imaging-Group/mij’s past year of commit activity
    Java 1 GPL-3.0 1 0 0 Updated Apr 3, 2023
  • EDF-Extended-Depth-of-Field Public

    An ImageJ plugin for stack focusing. Implementation of several algorithms form max-variance to max-wavelets.

    Biomedical-Imaging-Group/EDF-Extended-Depth-of-Field’s past year of commit activity
    Java 10 GPL-3.0 4 0 0 Updated Apr 2, 2023
  • CryoEM-Joint-Refinement Public

    Joint angular refinement and reconstruction algorithm for single-particle Cryo-EM.

    Biomedical-Imaging-Group/CryoEM-Joint-Refinement’s past year of commit activity
    MATLAB 2 1 0 0 Updated Sep 16, 2022
  • interactive-kit Public

    A toolkit for interactive visualization of signal and image processing on Jupyter Notebooks.

    Biomedical-Imaging-Group/interactive-kit’s past year of commit activity
    Python 10 MIT 6 3 1 Updated Mar 31, 2022
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