add_logMean.groovy

/**
 * Apply log to mean intensity measurements
 * Replaces the column 
*/

import qupath.imagej.objects.*

getCellObjects().each{
    
    def ml = it.getMeasurementList();
    String[] nameMeasurements = ml.getMeasurementNames();       
    //def meanMeasurements = nameMeasurements.grep{it.contains("Opal 480: Cell: Mean") || it.contains("Opal 690: Cytoplasm: Mean") || it.contains("Opal 780: Nucleus: Mean")}
    def meanMeasurements = nameMeasurements.grep{it.contains("beta-tubulin: Nucleus: Mean")}
    
    for (m in meanMeasurements){
        
        def mean = ml.getMeasurementValue(m)
        def log_mean = Math.log(mean)
        ml.putMeasurement(m, log_mean)

    }
    
}