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@BioimageAnalysisCoreWEHI

BioimageAnalysisCoreWEHI

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  1. napari_lattice napari_lattice Public

    Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for data from the Zeiss lattice lightsheet microscope.

    Jupyter Notebook 11 4

  2. pythonUtils pythonUtils Public

    Jupyter Notebook 2

  3. nexflow_halo_stitch nexflow_halo_stitch Public

    Python 2

  4. QuPath_scripts QuPath_scripts Public

    A set of QuPath scripts for various pre-processing/analysis tasks

    Groovy 1

  5. napari-workflows napari-workflows Public

    Forked from haesleinhuepf/napari-workflows

    Python 1 1

  6. jupyter_milton jupyter_milton Public

    Repo for notebooks and documents for jupyter to Milton job submission

    Jupyter Notebook 1

Repositories

Showing 9 of 9 repositories
  • vizgen-postprocessing_container Public

    Apptainer for running vizgen-postprocessing tool with the cellpose2 plugin

    BioimageAnalysisCoreWEHI/vizgen-postprocessing_container’s past year of commit activity
    Dockerfile 0 Apache-2.0 0 0 0 Updated Jul 16, 2024
  • jupyter_milton Public

    Repo for notebooks and documents for jupyter to Milton job submission

    BioimageAnalysisCoreWEHI/jupyter_milton’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Apr 23, 2024
  • napari_lattice Public

    Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for data from the Zeiss lattice lightsheet microscope.

    BioimageAnalysisCoreWEHI/napari_lattice’s past year of commit activity
    Jupyter Notebook 11 GPL-3.0 4 24 (1 issue needs help) 7 Updated Jan 18, 2024
  • tonkin_lab Public

    Code for Tonkin Lab data

    BioimageAnalysisCoreWEHI/tonkin_lab’s past year of commit activity
    ImageJ Macro 0 0 0 0 Updated Oct 26, 2023
  • HDAB_counts_HPC Public
    BioimageAnalysisCoreWEHI/HDAB_counts_HPC’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 2, 2023
  • nexflow_halo_stitch Public
    BioimageAnalysisCoreWEHI/nexflow_halo_stitch’s past year of commit activity
    Python 2 0 0 0 Updated May 19, 2023
  • QuPath_scripts Public

    A set of QuPath scripts for various pre-processing/analysis tasks

    BioimageAnalysisCoreWEHI/QuPath_scripts’s past year of commit activity
    Groovy 1 GPL-3.0 0 0 0 Updated Aug 9, 2022
  • napari-workflows Public Forked from haesleinhuepf/napari-workflows
    BioimageAnalysisCoreWEHI/napari-workflows’s past year of commit activity
    Python 1 BSD-3-Clause 9 0 0 Updated Feb 16, 2022
  • pythonUtils Public
    BioimageAnalysisCoreWEHI/pythonUtils’s past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated Nov 15, 2021

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