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Workflow file for this run

name: Test suite
on:
workflow_dispatch:
pull_request:
branches:
- develop
- master
paths:
- .github/workflows/testsuite.yml
- segmetrics/*.py
- setup.py
- tests/*.py
- tests/*.csv
- requirements.txt
push:
branches:
- master
permissions:
contents: read
issues: write
pull-requests: write
jobs:
python_lint:
name: Linting
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@v4
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install flake8 isort
- name: Run flake8
shell: bash
run: |
flake8 segmetrics
flake8 tests
- name: Run isort
shell: bash
run: |
isort segmetrics --check-only
isort tests --check-only
type_checking:
name: Type checking
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: "3.10"
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install mypy
- name: Run mypy
shell: bash
run: |
mypy --config-file .mypy.ini --ignore-missing-imports segmetrics
run_testsuite:
name: Tests
runs-on: ubuntu-latest
strategy:
matrix:
python-version:
- "3.8"
- "3.9"
- "3.10"
- "3.11"
- "3.12"
steps:
- name: Checkout
uses: actions/checkout@v4
- name: Install system dependencies
shell: bash
run: |
sudo apt install -y libopenblas-dev
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install -r requirements.txt
pip install -r tests/requirements.txt
- name: Run tests
uses: kostrykin/report-test-coverage-action@v1.0.0
with:
report: ${{ strategy.job-index == 0 }}
gist-id: f46ddefff0798639bc320b13331dc7ca
github-auth: ${{ secrets.GITHUB_TOKEN }}
gist-auth: ${{ secrets.GIST_SECRET }}
gist-filename: segmetrics.json
run: |
coverage run -m unittest discover
python -m coverage json --omit "tests/*,segmetrics/deprecated.py"