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Evaluate and plot symbolic expressions based on simulation results #2152

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merged 13 commits into from
Nov 1, 2023

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@dweindl dweindl commented Jul 27, 2023

Adds functions amici.numpy.evaluate and amici.plotting.plot_expressions to evaluate or directly plot symbolic expressions of model quantities, respectively.

Demo: see end of this section https://amici--2152.org.readthedocs.build/en/2152/ExampleSteadystate.html#Plotting-trajectories

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codecov bot commented Jul 27, 2023

Codecov Report

Merging #2152 (cee7e5e) into develop (ea95896) will decrease coverage by 0.03%.
The diff coverage is 53.33%.

Impacted file tree graph

@@             Coverage Diff             @@
##           develop    #2152      +/-   ##
===========================================
- Coverage    76.63%   76.61%   -0.03%     
===========================================
  Files           82       82              
  Lines        14985    15000      +15     
===========================================
+ Hits         11484    11492       +8     
- Misses        3501     3508       +7     
Flag Coverage Δ
cpp 73.53% <ø> (ø)
petab 53.82% <13.33%> (-0.11%) ⬇️
python 77.17% <53.33%> (-0.07%) ⬇️
sbmlsuite ?

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Files Coverage Δ
python/sdist/amici/numpy.py 82.82% <100.00%> (+1.50%) ⬆️
python/sdist/amici/plotting.py 0.00% <0.00%> (ø)

@dweindl dweindl marked this pull request as ready for review September 20, 2023 09:07
@dweindl dweindl requested a review from a team as a code owner September 20, 2023 09:07
@dweindl dweindl merged commit 71295a5 into develop Nov 1, 2023
15 of 18 checks passed
@dweindl dweindl deleted the feature_dw_plot_exprs branch November 1, 2023 08:49
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2 participants