Add sllh computation back to petab_objective.simulate_petab

.github/workflows/test_benchmark_collection_models.yml

@@ -60,6 +60,12 @@ jobs:
         git clone --depth 1 https://github.com/benchmarking-initiative/Benchmark-Models-PEtab.git \
           && export BENCHMARK_COLLECTION="$(pwd)/Benchmark-Models-PEtab/Benchmark-Models/" \
           && AMICI_PARALLEL_COMPILE=2 tests/benchmark-models/test_benchmark_collection.sh
+
+    # run gradient checks
+    - name: Run Gradient Checks
+      run: |
+        pip install git+https://github.com/ICB-DCM/fiddy.git \
+          && cd tests/benchmark-models && pytest ./test_petab_benchmark.py
 
     # upload results
     - uses: actions/upload-artifact@v3

.gitignore

@@ -198,3 +198,6 @@ Benchmark-Models-PEtab/
 /test_bmc/
 
 CS_Signalling_ERBB_RAS_AKT/
+cache_fiddy/*
+debug/*
+tests/benchmark-models/cache_fiddy/*