Python Tests #2179
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name: Python Tests | |
on: | |
push: | |
branches: | |
- develop | |
- master | |
pull_request: | |
branches: | |
- master | |
workflow_dispatch: | |
schedule: | |
- cron: '48 4 * * *' | |
jobs: | |
build: | |
name: Python Version Matrix | |
runs-on: ubuntu-22.04 | |
continue-on-error: ${{ matrix.experimental }} | |
env: | |
AMICI_SKIP_CMAKE_TESTS: "TRUE" | |
AMICI_PARALLEL_COMPILE: "" | |
strategy: | |
fail-fast: false | |
matrix: | |
python-version: ['3.10', '3.11', '3.12'] | |
experimental: [false] | |
steps: | |
- run: echo "AMICI_DIR=$(pwd)" >> $GITHUB_ENV | |
- run: echo "BNGPATH=${AMICI_DIR}/ThirdParty/BioNetGen-2.7.0" >> $GITHUB_ENV | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 20 | |
- name: Install apt dependencies | |
uses: ./.github/actions/install-apt-dependencies | |
- name: Build BNGL | |
run: scripts/buildBNGL.sh | |
- name: Install python package | |
run: scripts/installAmiciSource.sh | |
# install pysb before sympy to allow for sympy>=1.12 (https://github.com/pysb/pysb/commit/e83937cb8c74afc9b2fa96595b68464946745f33) | |
- run: source venv/bin/activate && pip3 install git+https://github.com/pysb/pysb | |
# until sympy>1.12 is released | |
- run: source venv/bin/activate && pip3 install git+https://github.com/sympy/sympy.git@master | |
if: matrix.python-version == '3.12' | |
- run: source venv/bin/activate && pip3 install "sympy>=1.12.1" | |
if: matrix.python-version != '3.12' | |
- name: Python tests | |
run: | | |
source venv/bin/activate \ | |
&& python3 -m pytest \ | |
--durations=10 \ | |
--ignore-glob=*petab* \ | |
--ignore-glob=*test_splines.py ${AMICI_DIR}/python/tests |