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How to best root the tree #4

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ycl6 opened this issue Oct 27, 2021 · 0 comments
Open

How to best root the tree #4

ycl6 opened this issue Oct 27, 2021 · 0 comments

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@ycl6
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ycl6 commented Oct 27, 2021

The current practice is to randomly pick a taxa (with sample) and assign it as outgroup. There have been suggestions to do this differently. Need to re-visit this when free.

phy_tree(ps) <- root(phy_tree(ps), sample(taxa_names(ps), 1), resolve.root = TRUE)
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@ycl6