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setup.py
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setup.py
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import os
from setuptools import setup, find_packages
from src.version import __version__
cur_path = os.path.abspath(os.path.dirname(__file__))
with open(os.path.join(cur_path, 'README.md'), encoding='utf-8') as f:
long_description = f.read()
setup(
name='SVision',
version=__version__,
description='SV/CSV callers',
long_description=long_description,
url='https://github.com/xjtu-omics/SVision',
# download_url = 'https://github.com/xjtu-omics/SVision/archive/refs/tags/v1.2.2-beta.tar.gz',
author='Jiadong Lin, Songbo Wang',
author_email='jiadong66@stu.xjtu.edu.cn, songbowang125@163.com',
license='GPLv3',
classifiers=[
'Operating System :: POSIX :: Linux',
'Topic :: Scientific/Engineering :: Bio-Informatics',
'License :: OSI Approved :: GNU General Public License v3 (GPLv3)',
'Programming Language :: Python :: 3.6'
],
keywords=['SVision', 'Deep learning', 'Complex structural variants', 'Structural variants', 'Single moleculo sequencing'],
packages = ['src', 'src/collection', 'src/network', 'src/segmentplot'],
data_files = [("", ["LICENSE"])],
zip_safe=False,
python_requires='>=3.6',
install_requires=['scipy==1.5.4', 'tensorflow==1.14.0',
'pysam', 'pyvcf', 'intervaltree', 'beautifulsoup4'],
scripts=['SVision'],
)