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Releases: wwood/galah

v0.4.2

03 Sep 06:11
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  • Documentation updates (thanks @solc42)

v0.4.1

02 Sep 06:25
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  • Documentation updates (thanks @solc42)
  • Add DOI to citation

v0.4.0

18 Jan 04:47
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What's Changed

cluster: Add --checkm2-quality-file. Fixes #28.
Update to clap command line parser v4
Use skani as the default genome comparison tool, instead of fastANI

New Contributors

Full Changelog: v0.3.1...v0.4.0

v0.3.1

30 Nov 00:36
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v0.3.0

10 Dec 21:29
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v0.2.0

31 Aug 23:25
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  • Overall full help for cluster mode, add man as a dependency.
  • Aligned fraction is calculated by galah from fragment counts, rather than relying on FastANI's thresholds. See #7 and ParBLiSS/FastANI#70
  • Update FastANI dependency version to 1.31 (#6)
  • Add further output options e.g. --output-representative-fasta-directory-copy and --output-representative-list. (#3)
  • Add ability to change quality formula with --quality-formula, and default to Parks2020_reduced.
  • Rename the --prethreshold-ani argument to be --precluster-ani.

Thanks to Antônio Pedro Camargo (@apcamargo ) for help on a few of these issues.

v0.1.0

20 Feb 06:49
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Initial release.