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Unable to find some HG38 ENCODE cCREs from UCSC table browser in SCREEN v3 #220

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hchetia opened this issue Feb 1, 2024 · 0 comments

hchetia commented Feb 1, 2024 •

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Hi,
I am using the annotation of ENCODE cCREs provided in UCSC table browser for HG38.

However, some of these elements are not present in SCREEN registry3.

EXAMPLE 1- here's an example element that I couldn't find in SCREEN using either the ID or the genomic coordinates.

I was also not able to access registry2 that the search page tried to redirect me to. I got "bad gateway" message for this link.

EXAMPLE 2- here's an example element that I couldn't find in SCREEN using the ID.

For the second example, search using the genomic coordinates led to an enhancer with a different ID but overlaps the one I originally searched for.

What I can do to the corresponding information accurately for these missing IDs from SCREEN?

Thanks.

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