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Hi, I am using the annotation of ENCODE cCREs provided in UCSC table browser for HG38.
However, some of these elements are not present in SCREEN registry3.
EXAMPLE 1- here's an example element that I couldn't find in SCREEN using either the ID or the genomic coordinates.
I was also not able to access registry2 that the search page tried to redirect me to. I got "bad gateway" message for this link.
EXAMPLE 2- here's an example element that I couldn't find in SCREEN using the ID.
For the second example, search using the genomic coordinates led to an enhancer with a different ID but overlaps the one I originally searched for.
What I can do to the corresponding information accurately for these missing IDs from SCREEN?
Thanks.
The text was updated successfully, but these errors were encountered:
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Hi,
![image](https://private-user-images.githubusercontent.com/64626735/301635700-3d48de29-53af-4a57-bd34-0ef43c66fa99.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.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.1P5Uzzc7CBLIib5hGiVsMa9_hYG0KK8ylfY9l7BXRMU)
I am using the annotation of ENCODE cCREs provided in UCSC table browser for HG38.
However, some of these elements are not present in SCREEN registry3.
EXAMPLE 1- here's an example element that I couldn't find in SCREEN using either the ID or the genomic coordinates.
![image](https://private-user-images.githubusercontent.com/64626735/301635290-22b597f1-cb37-44e7-81e3-bf2c39450a6d.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpc3MiOiJnaXRodWIuY29tIiwiYXVkIjoicmF3LmdpdGh1YnVzZXJjb250ZW50LmNvbSIsImtleSI6ImtleTUiLCJleHAiOjE3MjYxNDEwNjIsIm5iZiI6MTcyNjE0MDc2MiwicGF0aCI6Ii82NDYyNjczNS8zMDE2MzUyOTAtMjJiNTk3ZjEtY2IzNy00NGU3LTgxZTMtYmYyYzM5NDUwYTZkLnBuZz9YLUFtei1BbGdvcml0aG09QVdTNC1ITUFDLVNIQTI1NiZYLUFtei1DcmVkZW50aWFsPUFLSUFWQ09EWUxTQTUzUFFLNFpBJTJGMjAyNDA5MTIlMkZ1cy1lYXN0LTElMkZzMyUyRmF3czRfcmVxdWVzdCZYLUFtei1EYXRlPTIwMjQwOTEyVDExMzI0MlomWC1BbXotRXhwaXJlcz0zMDAmWC1BbXotU2lnbmF0dXJlPTdkODM4NmYxYzQ4N2M3OTQxYjZkY2M0NTM1ODRiZjk5ZWMwOWI4ZDdhYjk4Yjg3ZTI0ZmIyNTc5NjU3ZjA1YjgmWC1BbXotU2lnbmVkSGVhZGVycz1ob3N0JmFjdG9yX2lkPTAma2V5X2lkPTAmcmVwb19pZD0wIn0.MKE9yuUGVKVGCSS3QYZoQbSgn8_nfHBFq0eapmciWnM)
I was also not able to access registry2 that the search page tried to redirect me to. I got "bad gateway" message for this link.
![image](https://private-user-images.githubusercontent.com/64626735/301635417-c567aba0-eb6c-4588-9fed-1b31493fd21d.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.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.UgPcOcD-OOntSkIfDl5ne0Uk1kHAwneUlLJgkVwnAJ4)
EXAMPLE 2- here's an example element that I couldn't find in SCREEN using the ID.
![image](https://private-user-images.githubusercontent.com/64626735/301639496-15f07a3c-6ffc-47de-89d2-cd4f51185841.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.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.rqUZ14qA_RgrNOL02uAOAnyEY7A2OvcpJ8fkCdCm8Z0)
For the second example, search using the genomic coordinates led to an enhancer with a different ID but overlaps the one I originally searched for.
What I can do to the corresponding information accurately for these missing IDs from SCREEN?
Thanks.
The text was updated successfully, but these errors were encountered: