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Add low resolution coupled tests #232

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merged 15 commits into from
Oct 26, 2020
Merged

Add low resolution coupled tests #232

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85dd899
remove incorrect tests and replace with correct tests
DeniseWorthen Oct 21, 2020
78da812
add correct default vars for coupled model
DeniseWorthen Oct 21, 2020
a9393ce
add correct edit_inputs for coupled model
DeniseWorthen Oct 21, 2020
c173100
remove incorrect fv3_conf files for coupled model and add correct ones
DeniseWorthen Oct 21, 2020
5ed9459
fix MOM_input templates and nems.configure for coupled model
DeniseWorthen Oct 21, 2020
c06e423
additional small changes
DeniseWorthen Oct 21, 2020
4e0de1a
update rt.conf with correct test names
DeniseWorthen Oct 21, 2020
8a3f59d
Merges in changes from final S2S PR (194)
DeniseWorthen Oct 22, 2020
92cfc32
Merge branch 'develop' into feature/fixcoupled_tests
DeniseWorthen Oct 22, 2020
238d194
add wcoss_cray logs (from Minsuk)
DeniseWorthen Oct 23, 2020
4694a1d
point to new baseline skip-ci
DeniseWorthen Oct 23, 2020
a36faa7
fix missed rtpwd setting skip-ci
DeniseWorthen Oct 23, 2020
e5be00c
add orion logs
DeniseWorthen Oct 23, 2020
3dcbb0c
add dell-p3 logs
DeniseWorthen Oct 23, 2020
c8e2d31
add hera logs
DeniseWorthen Oct 23, 2020
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695 changes: 373 additions & 322 deletions tests/RegressionTests_hera.intel.log
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679 changes: 365 additions & 314 deletions tests/RegressionTests_orion.intel.log
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96 changes: 48 additions & 48 deletions tests/RegressionTests_wcoss_cray.log
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667 changes: 359 additions & 308 deletions tests/RegressionTests_wcoss_dell_p3.log
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206 changes: 140 additions & 66 deletions tests/default_vars.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -21,13 +21,13 @@ elif [ $MACHINE_ID = wcoss_dell_p3 ]; then
TASKS_stretch=48 ; TPN_stretch=28 ; INPES_stretch=2 ; JNPES_stretch=4
TASKS_strnest=96 ; TPN_strnest=28 ; INPES_strnest=2 ; JNPES_strnest=4

TASKS_cpl_dflt=318; TPN_cpl_dflt=28; INPES_cpl_dflt=3; JNPES_cpl_dflt=8
TASKS_cpl_dflt=192; TPN_cpl_dflt=28; INPES_cpl_dflt=3; JNPES_cpl_dflt=8
THRD_cpl_dflt=1; WPG_cpl_dflt=6; MPB_cpl_dflt="0 143"; APB_cpl_dflt="0 149"
OPB_cpl_dflt="150 269"; IPB_cpl_dflt="270 317"
OPB_cpl_dflt="150 179"; IPB_cpl_dflt="180 191"

TASKS_cpl_thrd=246; TPN_cpl_thrd=14; INPES_cpl_thrd=3; JNPES_cpl_thrd=4
TASKS_cpl_thrd=120; TPN_cpl_thrd=14; INPES_cpl_thrd=3; JNPES_cpl_thrd=4
THRD_cpl_thrd=2; WPG_cpl_thrd=6; MPB_cpl_thrd="0 77"; APB_cpl_thrd="0 77"
OPB_cpl_thrd="78 197"; IPB_cpl_thrd="198 245"
OPB_cpl_thrd="78 107"; IPB_cpl_thrd="108 119"

TASKS_cpl_bmrk=480; TPN_cpl_bmrk=28; INPES_cpl_bmrk=6; JNPES_cpl_bmrk=8
THRD_cpl_bmrk=1; WPG_cpl_bmrk=24; MPB_cpl_bmrk="0 287"; APB_cpl_bmrk="0 311"
Expand All @@ -37,20 +37,28 @@ elif [ $MACHINE_ID = wcoss_dell_p3 ]; then
THRD_cpl_wwav=1; WPG_cpl_wwav=24; MPB_cpl_wwav="0 287"; APB_cpl_wwav="0 311"
OPB_cpl_wwav="312 431"; IPB_cpl_wwav="432 479"; WPB_cpl_wwav="480 519"

TASKS_cpl_c192=288; TPN_cpl_c192=28; INPES_cpl_c192=4; JNPES_cpl_c192=8
THRD_cpl_c192=1; WPG_cpl_c192=12; MPB_cpl_c192="0 191"; APB_cpl_c192="0 203"
OPB_cpl_c192="204 263"; IPB_cpl_c192="264 287"

TASKS_cpl_c384=318; TPN_cpl_c384=28; INPES_cpl_c384=3; JNPES_cpl_c384=8
THRD_cpl_c384=1; WPG_cpl_c384=6; MPB_cpl_c384="0 143"; APB_cpl_c384="0 149"
OPB_cpl_c384="150 269"; IPB_cpl_c384="270 317"

elif [[ $MACHINE_ID = orion.* ]]; then

TASKS_dflt=150 ; TPN_dflt=40 ; INPES_dflt=3 ; JNPES_dflt=8
TASKS_thrd=84 ; TPN_thrd=20 ; INPES_thrd=3 ; JNPES_thrd=4
TASKS_stretch=48 ; TPN_stretch=12 ; INPES_stretch=2 ; JNPES_stretch=4
TASKS_strnest=96 ; TPN_strnest=12 ; INPES_strnest=2 ; JNPES_strnest=4

TASKS_cpl_dflt=318; TPN_cpl_dflt=40; INPES_cpl_dflt=3; JNPES_cpl_dflt=8
TASKS_cpl_dflt=192; TPN_cpl_dflt=40; INPES_cpl_dflt=3; JNPES_cpl_dflt=8
THRD_cpl_dflt=1; WPG_cpl_dflt=6; MPB_cpl_dflt="0 143"; APB_cpl_dflt="0 149"
OPB_cpl_dflt="150 269"; IPB_cpl_dflt="270 317"
OPB_cpl_dflt="150 179"; IPB_cpl_dflt="180 191"

TASKS_cpl_thrd=246; TPN_cpl_thrd=40; INPES_cpl_thrd=3; JNPES_cpl_thrd=4
TASKS_cpl_thrd=120; TPN_cpl_thrd=40; INPES_cpl_thrd=3; JNPES_cpl_thrd=4
THRD_cpl_thrd=2; WPG_cpl_thrd=6; MPB_cpl_thrd="0 77"; APB_cpl_thrd="0 77"
OPB_cpl_thrd="78 197"; IPB_cpl_thrd="198 245"
OPB_cpl_thrd="78 107"; IPB_cpl_thrd="108 119"

TASKS_cpl_bmrk=480; TPN_cpl_bmrk=40; INPES_cpl_bmrk=6; JNPES_cpl_bmrk=8
THRD_cpl_bmrk=1; WPG_cpl_bmrk=24; MPB_cpl_bmrk="0 287"; APB_cpl_bmrk="0 311"
Expand All @@ -60,20 +68,28 @@ elif [[ $MACHINE_ID = orion.* ]]; then
THRD_cpl_wwav=1; WPG_cpl_wwav=24; MPB_cpl_wwav="0 287"; APB_cpl_wwav="0 311"
OPB_cpl_wwav="312 431"; IPB_cpl_wwav="432 479"; WPB_cpl_wwav="480 519"

TASKS_cpl_c192=288; TPN_cpl_c192=40; INPES_cpl_c192=4; JNPES_cpl_c192=8
THRD_cpl_c192=1; WPG_cpl_c192=12; MPB_cpl_c192="0 191"; APB_cpl_c192="0 203"
OPB_cpl_c192="204 263"; IPB_cpl_c192="264 287"

TASKS_cpl_c384=318; TPN_cpl_c384=40; INPES_cpl_c384=3; JNPES_cpl_c384=8
THRD_cpl_c384=1; WPG_cpl_c384=6; MPB_cpl_c384="0 143"; APB_cpl_c384="0 149"
OPB_cpl_c384="150 269"; IPB_cpl_c384="270 317"

elif [[ $MACHINE_ID = hera.* ]]; then

TASKS_dflt=150 ; TPN_dflt=40 ; INPES_dflt=3 ; JNPES_dflt=8
TASKS_thrd=84 ; TPN_thrd=20 ; INPES_thrd=3 ; JNPES_thrd=4
TASKS_stretch=48 ; TPN_stretch=12 ; INPES_stretch=2 ; JNPES_stretch=4
TASKS_strnest=96 ; TPN_strnest=12 ; INPES_strnest=2 ; JNPES_strnest=4

TASKS_cpl_dflt=318; TPN_cpl_dflt=40; INPES_cpl_dflt=3; JNPES_cpl_dflt=8
TASKS_cpl_dflt=192; TPN_cpl_dflt=40; INPES_cpl_dflt=3; JNPES_cpl_dflt=8
THRD_cpl_dflt=1; WPG_cpl_dflt=6; MPB_cpl_dflt="0 143"; APB_cpl_dflt="0 149"
OPB_cpl_dflt="150 269"; IPB_cpl_dflt="270 317"
OPB_cpl_dflt="150 179"; IPB_cpl_dflt="180 191"

TASKS_cpl_thrd=246; TPN_cpl_thrd=40; INPES_cpl_thrd=3; JNPES_cpl_thrd=4
TASKS_cpl_thrd=120; TPN_cpl_thrd=40; INPES_cpl_thrd=3; JNPES_cpl_thrd=4
THRD_cpl_thrd=2; WPG_cpl_thrd=6; MPB_cpl_thrd="0 77"; APB_cpl_thrd="0 77"
OPB_cpl_thrd="78 197"; IPB_cpl_thrd="198 245"
OPB_cpl_thrd="78 107"; IPB_cpl_thrd="108 119"

TASKS_cpl_bmrk=480; TPN_cpl_bmrk=40; INPES_cpl_bmrk=6; JNPES_cpl_bmrk=8
THRD_cpl_bmrk=1; WPG_cpl_bmrk=24; MPB_cpl_bmrk="0 287"; APB_cpl_bmrk="0 311"
Expand All @@ -83,6 +99,14 @@ elif [[ $MACHINE_ID = hera.* ]]; then
THRD_cpl_wwav=1; WPG_cpl_wwav=24; MPB_cpl_wwav="0 287"; APB_cpl_wwav="0 311"
OPB_cpl_wwav="312 431"; IPB_cpl_wwav="432 479"; WPB_cpl_wwav="480 519"

TASKS_cpl_c192=288; TPN_cpl_c192=40; INPES_cpl_c192=4; JNPES_cpl_c192=8
THRD_cpl_c192=1; WPG_cpl_c192=12; MPB_cpl_c192="0 191"; APB_cpl_c192="0 203"
OPB_cpl_c192="204 263"; IPB_cpl_c192="264 287"

TASKS_cpl_c384=318; TPN_cpl_c384=40; INPES_cpl_c384=3; JNPES_cpl_c384=8
THRD_cpl_c384=1; WPG_cpl_c384=6; MPB_cpl_c384="0 143"; APB_cpl_c384="0 149"
OPB_cpl_c384="150 269"; IPB_cpl_c384="270 317"

elif [[ $MACHINE_ID = linux.* ]]; then

if [[ $CI_TEST = true ]]; then
Expand Down Expand Up @@ -121,6 +145,29 @@ elif [[ $MACHINE_ID = stampede.* ]]; then
TASKS_thrd=84 ; TPN_thrd=24 ; INPES_thrd=3 ; JNPES_thrd=4
TASKS_stretch=48 ; TPN_stretch=12 ; INPES_stretch=2 ; JNPES_stretch=4

TASKS_cpl_dflt=192; TPN_cpl_dflt=48; INPES_cpl_dflt=3; JNPES_cpl_dflt=8
THRD_cpl_dflt=1; WPG_cpl_dflt=6; MPB_cpl_dflt="0 143"; APB_cpl_dflt="0 149"
OPB_cpl_dflt="150 179"; IPB_cpl_dflt="180 191"

TASKS_cpl_thrd=120; TPN_cpl_thrd=48; INPES_cpl_thrd=3; JNPES_cpl_thrd=4
THRD_cpl_thrd=2; WPG_cpl_thrd=6; MPB_cpl_thrd="0 77"; APB_cpl_thrd="0 77"
OPB_cpl_thrd="78 107"; IPB_cpl_thrd="108 119"

TASKS_cpl_bmrk=480; TPN_cpl_bmrk=48; INPES_cpl_bmrk=6; JNPES_cpl_bmrk=8
THRD_cpl_bmrk=1; WPG_cpl_bmrk=24; MPB_cpl_bmrk="0 287"; APB_cpl_bmrk="0 311"
OPB_cpl_bmrk="312 431"; IPB_cpl_bmrk="432 479"

TASKS_cpl_wwav=520; TPN_cpl_wwav=48; INPES_cpl_wwav=6; JNPES_cpl_wwav=8
THRD_cpl_wwav=1; WPG_cpl_wwav=24; MPB_cpl_wwav="0 287"; APB_cpl_wwav="0 311"
OPB_cpl_wwav="312 431"; IPB_cpl_wwav="432 479"; WPB_cpl_wwav="480 519"

TASKS_cpl_c192=288; TPN_cpl_c192=40; INPES_cpl_c192=4; JNPES_cpl_c192=8
THRD_cpl_c192=1; WPG_cpl_c192=12; MPB_cpl_c192="0 191"; APB_cpl_c192="0 203"
OPB_cpl_c192="204 263"; IPB_cpl_c192="264 287"

TASKS_cpl_c384=318; TPN_cpl_c384=48; INPES_cpl_c384=3; JNPES_cpl_c384=8
THRD_cpl_c384=1; WPG_cpl_c384=6; MPB_cpl_c384="0 143"; APB_cpl_c384="0 149"
OPB_cpl_c384="150 269"; IPB_cpl_c384="270 317"
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else

echo "Unknown MACHINE_ID ${MACHINE_ID}"
Expand Down Expand Up @@ -284,94 +331,121 @@ export_cpl ()
{
export S2S=true

export DAYS="1"
export FHMAX="24"
export FDIAG="6"
export WLCLK=30

# default atm/ocn/ice resolution
export ATMRES='C96'
export OCNRES='100'
export ICERES='1.00'
export NX_GLB=360
export NY_GLB=320

# default resources
export TASKS=$TASKS_cpl_dflt
export TPN=$TPN_cpl_dflt
export INPES=$INPES_cpl_dflt
export JNPES=$JNPES_cpl_dflt
export THRD=$THRD_cpl_dflt

export WRTTASK_PER_GROUP=$WPG_cpl_dflt

export med_petlist_bounds=$MPB_cpl_dflt
export atm_petlist_bounds=$APB_cpl_dflt
export ocn_petlist_bounds=$OPB_cpl_dflt
export ice_petlist_bounds=$IPB_cpl_dflt

export ATMRES='C96'
# default ice and ocean resolution
export OCNRES='025'
export ICERES='0.25'
export NX_GLB=1440
export NY_GLB=1080
export SUITE_NAME=''
export MED_restart_data=''
export INPUT_NML="input.mom6.nml.IN"
# component and coupling timesteps
export DT_ATMOS='900'
export DT_CICE=${DT_ATMOS}
export DT_DYNAM_MOM6='1800'
export DT_THERM_MOM6='3600'
export CPL_SLOW=${DT_THERM_MOM6}
export CPL_FAST=${DT_ATMOS}

# nems.configure defaults
export NEMS_CONFIGURE="nems.configure.medcmeps_atm_ocn_ice.IN"
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export med_model="nems"
export atm_model="fv3"
export ocn_model="mom6"
export ice_model="cice6"
export wav_model="ww3"

export coupling_interval_slow_sec=${CPL_SLOW}
export coupling_interval_fast_sec=${CPL_FAST}

export RESTART_N=${FHMAX}
export CPLMODE='nems_orig'
export cap_dbug_flag="0"
export use_coldstart="false"
export RUNTYPE='startup'

# FV3 defaults
# to use new oro and ics created from 1deg ocean mask on c96 tiles
# set frac_grid=.F. but FRAC_GRID_INPUT=.T.
# to repro existing tests set both frac_grid and FRAC_GRID_INPUT to .F.
# to run frac_grid, set both frac_grid and FRAC_GRID_INPUTs to .T.
export FRAC_GRID='.F.'
export FRAC_GRID_INPUT='.T.'
export SUITE_NAME="FV3_GFS_2017_coupled"
export INPUT_NML=input.mom6_ccpp.nml.IN
export FIELD_TABLE="field_table"
#export FV3_RESTART_INTERVAL='0'
export RESTART_INTERVAL='0'

export FHROT='0'
export NSOUT='-1'
export FDIAG='6'
export NFHOUT='6'
#no high freq fv3 output
export NFHMAX_HF='-1'
export NFHOUT_HF='-1'

export CPLFLX='.T.'
export CPL='.true.'
export FRAC_GRID='.F.'
export NSTF_NAME='0,0,0,0,0'

# for FV3: default values will be changed if doing a warm-warm restart
export WARM_START='.F.'
export MAKE_NH='.T.'
export NA_INIT='1'
export EXTERNAL_IC='.T.'
export NGGPS_IC='.T.'
export MOUNTAIN='.F.'

# MOM6 defaults; 1 degree
export MOM_INPUT=MOM_input_template_100
export MOM6_RESTART_SETTING='n'
export med_model="nems"
export atm_model="fv3"
export ocn_model="mom6"
export ice_model="cice6"
export wav_model="ww3"
export cap_dbug_flag="0"
export use_coldstart="false"
# MOM6 river runoff
export MOM6_RIVER_RUNOFF='True'
# set USE_LA_LI2016 to the current default; this must be set False for restart repro
export MOM6_REPRO_LA='True'
# set the THERMO_SPANS_COUPLING to the current default; according to Gustavo and Alper, the correct setting is "False"
export MOM6_THERMO_SPAN='True'
export NPROC_ICE='48'
export DT_ATMOS='900' #needed for C96 cases
export DT_DYNAM_MOM6='900'
export DT_THERM_MOM6='1800'
export MOM_INPUT=MOM_input_template_025
# defaults for CICE runtype and restart writing
export RUNTYPE='startup'
export DUMPFREQ='d'
export DUMPFREQ_N='35'
export USE_RESTART_TIME='.false.'
# set false for CICE6
export RESTART_EXT='.false'
# resolution dependent files
export MOM6_RIVER_RUNOFF='False'
export FRUNOFF=""
export CHLCLIM="seawifs_1998-2006_smoothed_2X.nc"
# this must be set False for restart repro
export MOM6_REPRO_LA='False'
# since CPL_SLOW is set to DT_THERM, this should be always be false
export MOM6_THERMO_SPAN='False'
# no WW3
export MOM6_USE_WAVES='False'

# CICE6 defaults; 1 degree
export NPROC_ICE='12'
export MESHICE="mesh.mx${OCNRES}.nc"
export CICEGRID="grid_cice_NEMS_mx${OCNRES}.nc"
export CICEMASK="kmtu_cice_NEMS_mx${OCNRES}.nc"
export CHLCLIM="seawifs-clim-1997-2010.${NX_GLB}x${NY_GLB}.v20180328.nc"
export FRUNOFF="runoff.daitren.clim.${NX_GLB}x${NY_GLB}.v20180328.nc"
export RUNID='unknown'
# set large; restart frequency now controlled by restart_n in nems.configure
export DUMPFREQ='d'
export DUMPFREQ_N=1000
export USE_RESTART_TIME='.false.'
export RESTART_EXT='.false'
# setting to true will allow Frazil FW and Salt to be
# included in fluxes sent to ocean
export FRAZIL_FWSALT='.true.'
# default to write CICE average history files
export CICE_HIST_AVG='.true.'
# default setting for runid
export RUNID='unknown'
# for FV3: default values will be changed if doing a warm-warm restart
export WARM_START='.F.'
export MAKE_NH='.T.'
export NA_INIT='1'
export EXTERNAL_IC='.T.'
export NGGPS_IC='.T.'
export MOUNTAIN='.F.'
export CPLMODE='nems_orig'
export RESTART_PREFIX=''
export RESTART_SUFFIX=''

export RT35D=''
}
export_35d_run ()
{
export CNTL_DIR=""
export CNTLMED_DIR=""
export LIST_FILES=""
}
9 changes: 3 additions & 6 deletions tests/edit_inputs.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -2,10 +2,6 @@
set -eu

function edit_ice_in {
if [[ $DUMPFREQ == h ]]; then
DUMPFREQ_N=$(( DUMPFREQ_N*3600 ))
DUMPFREQ="s"
fi

jday=$(date -d "${SYEAR}-${SMONTH}-${SDAY} ${SHOUR}:00:00" +%j)
istep0=$(( ((10#$jday-1)*86400 + 10#$SHOUR*3600) / DT_CICE ))
Expand Down Expand Up @@ -42,13 +38,14 @@ function edit_mom_input {
-e "s/MOM6_RIVER_RUNOFF/$MOM6_RIVER_RUNOFF/g" \
-e "s/MOM6_THERMO_SPAN/$MOM6_THERMO_SPAN/g" \
-e "s/MOM6_REPRO_LA/$MOM6_REPRO_LA/g" \
-e "s/MOM6_USE_WAVES/$MOM6_USE_WAVES/g" \
-e "s/NX_GLB/$NX_GLB/g" \
-e "s/NY_GLB/$NY_GLB/g" \
-e "s/CHLCLIM/$CHLCLIM/g"
-e "s/CHLCLIM/$CHLCLIM/g"
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}

function edit_data_table {
sed -e "s/FRUNOFF/$FRUNOFF/g"
sed -e "s/FRUNOFF/$FRUNOFF/g"
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}

function edit_diag_table {
Expand Down
18 changes: 10 additions & 8 deletions ...f/cpld_fv3_mom6_cice_ww3_bmark_35d_run.IN → tests/fv3_conf/cpld_bmark_run.IN
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
mkdir INPUT RESTART history MOM6_OUTPUT
mkdir INPUT RESTART history MOM6_OUTPUT
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if [[ $ATMRES == 'C96' ]]; then
FV3_DIR=FV3_input_data
Expand Down Expand Up @@ -42,18 +42,20 @@ cp @[RTPWD]/CICE_FIX/@[OCNRES]/kmtu_cice_NEMS_mx@[OCNRES].nc .
cp @[RTPWD]/CICE_FIX/@[OCNRES]/mesh.mx@[OCNRES].nc .

# WW3 fix/input
cp @[RTPWD]/WW3_input_data/mod_def.* .
cp @[RTPWD]/WW3_input_data/ww3_multi_35d.inp ww3_multi.inp
if [[ $CPLWAV == .T. && $CPLWAV2ATM == .T. ]]; then
cp @[RTPWD]/WW3_input_data/mod_def.* .
if [[ $RT35D == .T. ]]; then
cp @[RTPWD]/WW3_input_data/ww3_multi_35d.inp ww3_multi.inp
cp @[RTPWD]/${WW3_IC}/*.000000.restart.gwes_30m ./restart.gwes_30m
else
cp @[RTPWD]/WW3_input_data/ww3_multi.inp .
fi
fi

# ICs
cp @[RTPWD]/${FV3_IC}/sfc_data*.nc ./INPUT
cp @[RTPWD]/${FV3_IC}/gfs_data*.nc ./INPUT
cp @[RTPWD]/${MOM6_IC}/MOM*.nc ./INPUT
# the BM ICs are still named cice5 and need to remain so until P5.0 is completed
cp @[RTPWD]/${CICE_IC}/cice5_model_@[ICERES].*.nc ./cice_model.res.nc
cp @[RTPWD]/${WW3_IC}/*.000000.restart.gwes_30m ./restart.gwes_30m

# CCPP
if [[ ! $SUITE_NAME == '' ]]; then
cp ${PATHTR}/FV3/ccpp/suites/suite_@[SUITE_NAME].xml .
fi
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