Parallel IO issue #1234
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bug
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What is the status of this issue? |
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Not resolved, yet. |
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@edwardhartnett bringing to your attention. Do you have any suggestions for @Hae-CheolKim-NOAA |
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This is a PIO error, not a netCDF error. Have we tried with the latest release of PIO and netCDF? It's complaining about a variable not found, what are the lines of code which are being called? Is there a test code that demonstrates this problem? If not, could you generate one please? That is, a single-file Fortran program which does the same thing the model is doing, and generates the same error? |
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I tested the new src cloned on Feb 15, 2023, this issue was not repeated and I was able to compile and initialize the 1/12-th degree DATM (CDEPS)-MOM6-CICE6 on HERA. Sorry for the delay in updating the status and thanks for your support. |
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@Hae-CheolKim-NOAA It looks to me the issue is resolved. Can we close it? |
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Yes, please. Thanks!
…On Mon, Mar 27, 2023 at 9:26 AM Jun Wang ***@***.***> wrote:
@Hae-CheolKim-NOAA <https://github.com/Hae-CheolKim-NOAA> It looks to me
the issue is resolved. Can we close it?
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TerrenceMcGuinness-NOAA
added a commit
to NOAA-EMC/global-workflow
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Oct 16, 2024
# Description This PR has the GitHub Pipeline script in the `github/workflows` directory for running CI tests to be preformed an AWS virtual cluster. It is setup to be launched from the dispatch action from the Actions tab. For now it will only run C48_ATM Resolves #3006 Once the yaml pipeline is in `.github/workflows` directory of the default branch we can test it against [PR 2977](#2977) which may be needed to build on Parallel Works Centos AWS. Code managers can check to see if the self-hosted runner [globalworkflow_parallelworks](https://github.com/NOAA-EMC/global-workflow/settings/actions/runners/22) is up and ready by checking the [Running](https://github.com/NOAA-EMC/global-workflow/settings/actions/runners) Settings. In pending work we should also be able spin up the cluster on demand from GitHub as well. <!-- For more on writing good commit messages, see https://cbea.ms/git-commit/ --> # Type of change - [ ] Bug fix (fixes something broken) - [ ] New feature (adds functionality) - [x] Maintenance (code refactor, clean-up, new CI test, etc.) # Change characteristics <!-- Choose YES or NO from each of the following and delete the other --> - Is this a breaking change (a change in existing functionality)? YES/NO - Does this change require a documentation update? YES/NO - Does this change require an update to any of the following submodules? YES/NO (If YES, please add a link to any PRs that are pending.) - [ ] EMC verif-global <!-- NOAA-EMC/EMC_verif-global#1234 --> - [ ] GDAS <!-- NOAA-EMC/GDASApp#1234 --> - [ ] GFS-utils <!-- NOAA-EMC/gfs-utils#1234 --> - [ ] GSI <!-- NOAA-EMC/GSI#1234 --> - [ ] GSI-monitor <!-- NOAA-EMC/GSI-Monitor#1234 --> - [ ] GSI-utils <!-- NOAA-EMC/GSI-Utils#1234 --> - [ ] UFS-utils <!-- ufs-community/UFS_UTILS#1234 --> - [ ] UFS-weather-model <!-- ufs-community/ufs-weather-model#1234 --> - [ ] wxflow <!-- NOAA-EMC/wxflow#1234 --> # How has this been tested? <!-- Please list any test you conducted, including the machine. CI Tests runs-end-to end on an AWS Centos based virtual cluster on Parallel Works. --> # Checklist - [ ] Any dependent changes have been merged and published - [x] My code follows the style guidelines of this project - [ ] I have performed a self-review of my own code - [ ] I have commented my code, particularly in hard-to-understand areas - [ ] I have documented my code, including function, input, and output descriptions - [ ] My changes generate no new warnings - [ ] New and existing tests pass with my changes - [x] This change is covered by an existing CI test or a new one has been added - [ ] I have made corresponding changes to the system documentation if necessary --------- Co-authored-by: tmcguinness <terry.mcguinness@noaa.gov>
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Description
With the new compilation I cloned on May 23, 2002, I advanced a run for 1/12-th degree DATM (CDEPS)-MOM6-CICE6 on HERA but bumped into an parallel IO issue. Looks like this has something to do with parallel netcdf lib.
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0: Abort with message NetCDF: Variable not found in file /scratch2/NCEPDEV/nwprod/hpc-stack/src/develop/pkg/pio-2.5.3/src/clib/pio_nc.c at line 1158
40: Abort with message NetCDF: Variable not found in file /scratch2/NCEPDEV/nwprod/hpc-stack/src/develop/pkg/pio-2.5.3/src/clib/pio_nc.c at line 1158
1: Abort with message NetCDF: Variable not found in file /scratch2/NCEPDEV/nwprod/hpc-stack/src/develop/pkg/pio-2.5.3/src/clib/pio_nc.c at line 1158
2: Abort with message NetCDF: Variable not found in file /scratch2/NCEPDEV/nwprod/hpc-stack/src/develop/pkg/pio-2.5.3/src/clib/pio_nc.c at line 1158
41: Abort with message NetCDF: Variable not found in file /scratch2/NCEPDEV/nwprod/hpc-stack/src/develop/pkg/pio-2.5.3/src/clib/pio_nc.c at line 1158
...
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What compilers/machines are you seeing this with? INTEL/HERA
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