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[develop] Add process lightning task (#644)
This PR adds the process lightning task to the SRW App from the NOAA-GSL RRFS_dev1 branch. The process lightning task is part of the RRFS configuration of the SRW App. --------- Co-authored-by: Edward Snyder <Edward.Snyder@noaa.com>
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,96 @@ | ||
| #!/bin/bash | ||
|
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| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # This J-JOB script runs the NetCDF lightning observation preprocess | ||
| # for the FV3-LAM model | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Source the variable definitions file and the bash utility functions. | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| . ${USHdir}/source_util_funcs.sh | ||
| source_config_for_task "task_process_lightning" ${GLOBAL_VAR_DEFNS_FP} | ||
| . ${USHdir}/job_preamble.sh "TRUE" | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Save current shell options (in a global array). Then set new options | ||
| # for this script/function. | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| { save_shell_opts; . $USHdir/preamble.sh; } > /dev/null 2>&1 | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Get the full path to the file in which this script/function is located | ||
| # (scrfunc_fp), the name of that file (scrfunc_fn), and the directory in | ||
| # which the file is located (scrfunc_dir). | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| scrfunc_fp=$( $READLINK -f "${BASH_SOURCE[0]}" ) | ||
| scrfunc_fn=$( basename "${scrfunc_fp}" ) | ||
| scrfunc_dir=$( dirname "${scrfunc_fp}" ) | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Print message indicating entry into script. | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| print_info_msg " | ||
| ======================================================================== | ||
| Entering script: \"${scrfunc_fn}\" | ||
| In directory: \"${scrfunc_dir}\" | ||
| This is the J-job script for the task that runs a lightning preprocess for | ||
| the specified cycle. | ||
| ========================================================================" | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Create the working directory under the cycle directory. | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| if [ "${CYCLE_TYPE}" == "spinup" ]; then | ||
| DATA="${DATA:-${COMIN}/process_lightning_spinup}" | ||
| else | ||
| DATA="${DATA:-${COMIN}/process_lightning}" | ||
| fi | ||
| mkdir_vrfy -p ${DATA} | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Call the ex-script for this J-job and pass to it the necessary varia- | ||
| # bles. | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| $SCRIPTSdir/exregional_process_lightning.sh || print_err_msg_exit "\ | ||
| Call to ex-script corresponding to J-job \"${scrfunc_fn}\" failed." | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Run job postamble. | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| job_postamble | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Restore the shell options saved at the beginning of this script/func- | ||
| # tion. | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| { restore_shell_opts; } > /dev/null 2>&1 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,193 @@ | ||
| #!/bin/bash | ||
|
|
||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Source the variable definitions file and the bash utility functions. | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| . $USHdir/source_util_funcs.sh | ||
| source_config_for_task "task_process_lightning" ${GLOBAL_VAR_DEFNS_FP} | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Save current shell options (in a global array). Then set new options | ||
| # for this script/function. | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| { save_shell_opts; . $USHdir/preamble.sh; } > /dev/null 2>&1 | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Get the full path to the file in which this script/function is located | ||
| # (scrfunc_fp), the name of that file (scrfunc_fn), and the directory in | ||
| # which the file is located (scrfunc_dir). | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| scrfunc_fp=$( readlink -f "${BASH_SOURCE[0]}" ) | ||
| scrfunc_fn=$( basename "${scrfunc_fp}" ) | ||
| scrfunc_dir=$( dirname "${scrfunc_fp}" ) | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Print message indicating entry into script. | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| print_info_msg " | ||
| ======================================================================== | ||
| Entering script: \"${scrfunc_fn}\" | ||
| In directory: \"${scrfunc_dir}\" | ||
| This is the ex-script for the task that runs lightning preprocessing | ||
| with FV3 for the specified cycle. | ||
| ========================================================================" | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Extract from CDATE the starting year, month, day, and hour of the | ||
| # forecast. These are needed below for various operations. | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| START_DATE=$(echo "${PDY} ${cyc}") | ||
| YYYYMMDDHH=$(date +%Y%m%d%H -d "${START_DATE}") | ||
|
|
||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Get into working directory | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| print_info_msg "$VERBOSE" " | ||
| Getting into working directory for lightning process ..." | ||
|
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||
| cd_vrfy ${DATA} | ||
|
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| pregen_grid_dir=$DOMAIN_PREGEN_BASEDIR/${PREDEF_GRID_NAME} | ||
|
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| print_info_msg "$VERBOSE" "pregen_grid_dir is $pregen_grid_dir" | ||
|
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||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # link or copy background and grid files | ||
| # | ||
| #----------------------------------------------------------------------- | ||
|
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| cp_vrfy ${pregen_grid_dir}/fv3_grid_spec fv3sar_grid_spec.nc | ||
|
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||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Link to the NLDN data | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| run_lightning=false | ||
| filenum=0 | ||
|
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||
| for incr in $(seq -25 5 5) ; do | ||
| filedate=$(date +"%y%j%H%M" -d "${START_DATE} ${incr} minutes ") | ||
| filename=${LIGHTNING_ROOT}/${filedate}0005r | ||
| if [ -r ${filename} ]; then | ||
| ((filenum += 1 )) | ||
| ln -sf ${filename} ./NLDN_lightning_${filenum} | ||
| run_lightning=true | ||
| else | ||
| echo " ${filename} does not exist" | ||
| fi | ||
| done | ||
|
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||
| echo "found GLD360 files: ${filenum}" | ||
|
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| #----------------------------------------------------------------------- | ||
| # | ||
| # copy bufr table from fix directory | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| BUFR_TABLE=${FIXgsi}/prepobs_prep_RAP.bufrtable | ||
|
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| cp_vrfy $BUFR_TABLE prepobs_prep.bufrtable | ||
|
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| #----------------------------------------------------------------------- | ||
| # | ||
| # Build namelist and run executable | ||
| # | ||
| # analysis_time : process obs used for this analysis date (YYYYMMDDHH) | ||
| # NLDN_filenum : number of NLDN lighting observation files | ||
| # IfAlaska : logic to decide if to process Alaska lightning obs | ||
| # bkversion : grid type (background will be used in the analysis) | ||
| # = 0 for ARW (default) | ||
| # = 1 for FV3LAM | ||
| #----------------------------------------------------------------------- | ||
|
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| cat << EOF > namelist.lightning | ||
| &setup | ||
| analysis_time = ${YYYYMMDDHH}, | ||
| NLDN_filenum = ${filenum}, | ||
| grid_type = "${PREDEF_GRID_NAME}", | ||
| obs_type = "nldn_nc" | ||
| / | ||
| EOF | ||
|
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| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Copy the executable to the run directory. | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| exec_fn="process_Lightning.exe" | ||
| exec_fp="$EXECdir/${exec_fn}" | ||
|
|
||
| if [ ! -f "${exec_fp}" ]; then | ||
| print_err_msg_exit "\ | ||
| The executable specified in exec_fp does not exist: | ||
| exec_fp = \"${exec_fp}\" | ||
| Build lightning process and rerun." | ||
| fi | ||
| # | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Run the process | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
|
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| if [[ "$run_lightning" == true ]]; then | ||
| PREP_STEP | ||
| eval ${RUN_CMD_UTILS} ${exec_fp} ${REDIRECT_OUT_ERR} || \ | ||
| print_err_msg_exit "\ | ||
| Call to executable (exec_fp) to run lightning (nc) process returned | ||
| with nonzero exit code: | ||
| exec_fp = \"${exec_fp}\"" | ||
| POST_STEP | ||
| fi | ||
|
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||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Print message indicating successful completion of script. | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| print_info_msg " | ||
| ======================================================================== | ||
| LIGHTNING PROCESS completed successfully!!! | ||
| Exiting script: \"${scrfunc_fn}\" | ||
| In directory: \"${scrfunc_dir}\" | ||
| ========================================================================" | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Restore the shell options saved at the beginning of this script/func- | ||
| # tion. | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| { restore_shell_opts; } > /dev/null 2>&1 |
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