Annotation helper tool for the manual curation of transposable element consensus sequences
-
Updated
May 22, 2024 - R
Annotation helper tool for the manual curation of transposable element consensus sequences
rMETL - realignment-based Mobile Element insertion detection Tool for Long read
GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.
Transposon Insertion Finder - Detection of new TE insertions in NGS data
An R/C++ package for simulating the evolution of retrotransposons over time.
SLURM-ready bash scripts to run the complete REPET pipeline
Bioinformatic analysis of RNA-Seq, WGBS, and Hi-C in Arabidopsis
A Python3 library for transposon fingerprinting
Genotyping of segregating mobile elements insertions
Methods for genome paper
This repository contains the code used in the Master's Thesis "Transcriptomic keys of aging" from the Master's Degree in Biomedicine and Molecular Oncology from the University of Oviedo
Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.
Bioinformatics project
Supporting repository for article "Software Evaluation for 'de novo' Detection of Transposons"
Pipeline to detect transposable elements (TEs) insertions polymorphism
Tool to find mge (phages, plasmids, and transposons) in cdiff. Scripts that allow Clostyper to be run in slurm.
Bi-allelic genotyping of reference transposable elements
Scan genomes for internally repeated sequences, elements which are repetitive in another species, or high-identity HGT candidate regions between species.
Analysis and selection of primers for the study of transposable elements.
Detect elevations and gaps in read coverage on metagenome contigs or assembled genomes
Add a description, image, and links to the transposons topic page so that developers can more easily learn about it.
To associate your repository with the transposons topic, visit your repo's landing page and select "manage topics."