Personalized reference editor for somatic mutation discovery
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Updated
Dec 2, 2022 - Java
Personalized reference editor for somatic mutation discovery
Datasets and analysis results released with the REVOLVER package for Cancer Evolution.
This page is reserved for NextFlow based Indell Calling Workflow (with Platypus) from DKFZ
a Nextflow SNV calling and annotation pipeline based on DKFZ-ODCF/SNVCallingWorkflow
a Nextflow ACE-Seq calling and annotation pipeline based on DKFZ-ODCF/ACEseqWorkflow
This R package repository performs optimal transport and kernel regression hypothesis testing. Functions to perform large scale simulations are also provided.
Transposable Element Finder - Detection of active transposable elements from NGS data
AI-based prediction of driver mutations
Detects hotspot regions for somatic mutations in 3D protein structures
Depository for Bioinformatics Master Project HT2022-VT2023
An R package for mutation quality control of cancer genomic sequening dataset
R Shiny based lightweight mutation exploration tool
This repo contains an R package to execute ROKET's real data analysis workflow on TCGA cancer types
Lineage inference from Gene Therapy assays with insertional mutagenesis and somatic mutations
Snakemake Pipeline for the Analyses of ChIP-seq data in Cancer samples
Tumor-only variant calling
Pipeline to call SNV's with 4 tools (VarDict, LoFreq, Mutect2 & SiNVICT)
Geno-DeBasher package for detection of germline and somatic variants
Explore and filter structural variant calls from Lumpy and Delly VCF files
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