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Mar 12, 2018 - Python
protein-data-bank
Here are 16 public repositories matching this topic...
local PDB manager
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Jan 15, 2020 - Python
Object-oriented processing of PDB files in Python
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Jun 7, 2019 - Python
Lattice2Backbone is a software tool that converts lattice representations of protein structures into detailed, carbon alpha-only backbone structures, bridging the gap between simplified models and comprehensive biological analysis in structural biology and bioinformatics.
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Feb 24, 2024 - Python
Some miscellaneous scripts I made to do protein analysis using the pytraj library
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Jan 5, 2019 - Python
A Python Framework for Integrating Classical and Quantum Mechanical Simulation Data, Experimental Data, and Cheminformatics into a Unified Predictive Engine for Macromolecular Design
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Jun 17, 2024 - Python
CA-2-HCOMB is a tool for simplifying single-chain protein structures from PDB files into manageable models like various honeycombs, retaining essential information for in-depth computations. It's efficient for large datasets and machine learning, and user-friendly for research and education.
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Mar 7, 2024 - Python
BPL is an Python app to solve Loop Closure Problems.
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Jan 21, 2022 - Python
Program to plot a Ramachandran plot of all dihedral angles from a given PDB file. Background is empirically generated from the peptides in the Top8000 PDB data set.
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Jul 16, 2024 - Python
A script that computationally designs a vaccine
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Jan 9, 2022 - Python
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
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Mar 27, 2023 - Python
A collection of useful tutorials for Protein Science
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Jun 29, 2015 - Python
Versatile computational pipeline for processing protein structure data for deep learning applications.
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Feb 14, 2024 - Python
Deep functional residue identification
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Mar 24, 2023 - Python
A Python API for the RCSB Protein Data Bank (PDB)
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May 29, 2024 - Python
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
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Jul 16, 2024 - Python
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