ncbi-taxonomy
Here are 39 public repositories matching this topic...
Codes I wrote for the paper : "Global determinants of freshwater and marine fish genetic diversity" Nature Communications, 2020
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Feb 10, 2020 - R
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Jul 6, 2017 - JavaScript
muddy_mine - mining pipeline
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Nov 27, 2021 - Python
GPT (Decoder only Transformer - from scratch) generated fake/phoney taxonomies (based on NCBI taxonomy dataset)
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Sep 10, 2023 - Jupyter Notebook
Annotate sequences by BLAST using NCBI taxonomy information
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Jul 27, 2022 - Perl
With Tkinter GUI. Provides autocomplete suggestions for organism names from a SQLite database, using Levenshtein distance for string matching.
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May 10, 2024 - Python
Find the best taxonomic assignement for the given genomic sequence based on maximum F-measure.
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Oct 30, 2022 - Python
NAUniSeq: A fast computational pipeline to search unique sequences for microbial diagnostics
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Sep 21, 2024 - Python
Entity Comparison using ncbi taxonomy and Wikipedia
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Oct 30, 2016 - JavaScript
create RDP classifier training files from NCBI taxonomy gbff file
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Aug 15, 2018 - Python
This Python script retrieve all children organism under an ancestor in NCBI taxonomy.
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Jul 17, 2024 - Python
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Aug 8, 2017 - Java
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Apr 15, 2017 - Python
TaxOnTree is a bioinformatic tool that automatically colors a phylogenetic tree according to the taxonomic information provided by NCBI taxonomy.
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Aug 24, 2022 - Perl
Download genomes from NCBI GenBank FTP site
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Oct 25, 2023 - Python
Ribosomal RNA Allele Tree
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Mar 30, 2018 - Python
muddy_db - mud volcano database
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Nov 27, 2021 - R
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