Quantitation of migration of fluorescent spots into regions of interest.
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Updated
Mar 9, 2018 - Python
Quantitation of migration of fluorescent spots into regions of interest.
BCCD (Blood Cell Count and Detection) Dataset is a small-scale dataset for blood cells detection.
Tools to create patches and build CSBDeep deep learning model for md-SR imaging
Edited the matterport keras implementation of MaskRCNN to include a FasterRCNN option and created a dataset interface for a fluorescenct microscopy dataset
Our solution for ICIAR 2018 Grand Challenge
This program aims to help geologists with the count of points in the process of petrographic in thin sections, reducing the use of paper and graphing it as the process advance.
Global Voxel Transformer Networks (GVTNets)
Procesamiento de Imágenes Microsópicas
convolutional-relational neural network architectures for segmentation of electron micrographs
Automatic plankton image classification software
Deep-Learning Based Automated Neuron Reconstruction from 3D Microscopy Images Using Synthetic Training Images
Image segmentation - general superpixel segmentation & center detection & region growing
First adoption of the reservoir paradigm for microscopy image data processing, here: T cell segmentation in live-cell Calcium image series.
Identification of individual grains in microscopic images
Label Free Prediction of Cell Painting from Brightfield Images
A scalable implementation of WobblyStitcher for 3D microscopy images
Napari Photobleach Correction
Python code that I used in my blog posts on the Zarr file format.
A web app that uses a custom-built Keras model to recognize and classify white blood cells from microscopic images. It can distinguish between different types of WBCs and identify artifacts and bursted cells. I created this app as a way to explore image recognition technologies and to learn how to develop Keras models from scratch.
Software simulating single-particle tracking experiment, generates localization files as well as movies. This repository was moved from: https://bitbucket.org/vertislav/sptpalm_simulator/src/master/
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