Procesamiento de Imágenes Microsópicas

Measures the integral radial density of a fluorescent signal in a nucleus of any shape

Edited the matterport keras implementation of MaskRCNN to include a FasterRCNN option and created a dataset interface for a fluorescenct microscopy dataset

Estudo da aplicação de algoritmos de processamento de imagens no estudo da contagem de celular cerebrais.

RESTful API for myovision project

Utilities for Philips XL30 Scanning Electron Microscope: annotation, overlay and auto-coloring of images aimed at producing both esthetic and scientifically valuable output

Deep-Learning Based Automated Neuron Reconstruction from 3D Microscopy Images Using Synthetic Training Images

Semantic segmentation on Electron Microscopy dataset using U-Net

Automatic plankton image classification software

convolutional-relational neural network architectures for segmentation of electron micrographs

Easier handling (loading/saving and extracting metadata) of NIS Elements .nd2 image files from miscroscopy

Implementation for multiples algorithims for resolution enhancement based in MSSR(Mean Shift)-Laplacian-DoG(Difference of Gaussians)-Hessian.

Data Collection utils for myovision Project

Command-line utilities to process images from the PerkinElmer's Operetta microscope

Software simulating single-particle tracking experiment, generates localization files as well as movies. This repository was moved from: https://bitbucket.org/vertislav/sptpalm_simulator/src/master/

Python code that I used in my blog posts on the Zarr file format.

Training / Fine-Tuning SAM and Performing Inference on Myotube / Nuclei Images

Simple GUI tool based on tkinter to enable coordinate transformation between TEM and LM images.

This is our capstone project for the Data Science workshop at neuefische. We worked together with the Institute of Biochemistry from the Veterinary Medical School Hanover to design an application for automated recognition and quantification of Neutrophil Extracellular Traps (NETs)

Tools to create patches and build CSBDeep deep learning model for md-SR imaging