This project aims do describe and explore the metagenomes of fern species of the genus Azolla.
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Updated
Aug 12, 2022 - Python
This project aims do describe and explore the metagenomes of fern species of the genus Azolla.
XGBoost implementation for bacteria family identification
Arche: a functional-optimized annotator for microbial meta(genomes)
To reproduce some results from "CAMISIM: simulating metagenomes and microbial communities". Authors: Simon Konnov, Ciara Makievskaya, Ruslan Gumerov
Application of Recurrent Neural Network to Metagenomic
Code associated with the Ley Lab animal gut metagenome assembly project
CWL implementation for DEMIC
HumanMetagenomeDB: a public repository of curated and standardized metadata for human metagenomes
PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.
Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
MicrobiomeStat Tutorial Repository: This is a comprehensive resource for learning how to use the MicrobiomeStat package. It provides a step-by-step guide to effectively analyze complex microbiome data.
Raw sequence metagenomic reads pre-processing: trimming, QC, and host contamination
A few scripts to help with the installation of MetaErg, the contig/bin annotation pipeline
This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye Rozov, Gil Goldshlager, Eran Halperin, and Ron Shamir
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
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