Serves as the backend code for https://www.curatemetabolicpathways.com
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Updated
Apr 26, 2021 - Python
Serves as the backend code for https://www.curatemetabolicpathways.com
prepBioCyc: Preprocess BioCyc files
scCellFie, inspired by the MATLAB-based CellFie tool, offers advanced analysis of metabolic functions on Python using single-cell and spatial transcriptomics. Efficient and user-friendly, it integrates with Scanpy to extend CellFie's capabilities, enabling in-depth single-cell and spatial metabolic task analysis.
MNXref: Reconciliation of metabolites and biochemical reactions for metabolic networks
a BIGG slint interface which will give you all the information associated with the metabolic model
reMap: relabeling metabolic pathway data with groups to improve prediction outcomes
A basic network of human metabolism, including key enzymes, intermediates, and hormonal influences
a metabolic json parser and streamlit for BIGG database
Web application of metabolics pathway visualisation, for the Gencovery business (https://gencovery.com/), created during the PDP project during the M1 of the Master of Bioinformatics, in Bordeaux.
Library to perform metabolic engineering tasks
Identifying reprogrammed metabolic routes given omics data.
Diversity-based enumeration of optimal context-specific metabolic networks
leADS: improved metabolic pathway inference based on active dataset subsampling
Metabolic pathway inference using non-negative matrix factorization with community detection
Pipeline plugins for PALADIN, providing HPC support, abundance (taxonomy, go terms), customized reports, etc
CHAP: Modeling Metabolic Pathways as Groups (with Augmentation)
PathVisio plugin to find relevant metabolic reactions from Rhea
Go REST API to replace Genbank, Uniprot, Rhea, and CHEMBL
A tool for representing genomic potential and transcriptomic expression into KEGG pathways
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