A Knowledge Graph of Common Chemical Names to their Molecular Definition
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Updated
May 29, 2024 - Jupyter Notebook
A Knowledge Graph of Common Chemical Names to their Molecular Definition
Python script to quickly extract promoter and terminator regions with the NCBI API. Search for the presence of individual pattern or transcription factor responsive elements with manual sequence (IUPAC) or JASPAR API.
IUPAC SMILES+ Specification
Blue Obelisk Data Repository - your one stop place of element and isotope data.
Transformer-based molecular generative model for antiviral drug design
A tool to convert IUPAC representations of glycans into SMILES strings.
pattern matching with error for small pattern size (<= 64) for DNA and IUPAC
InChI for NodeJS/TypeScript
Translate nucleotides (DNA & RNA) to aminoacid using IUPAC ambiguity codes
Encoder-decoders for translating different chemical formats.
🧪 Naming non-cyclical alkanes using the official IUPAC nomenclature
Biostrings port in Java (for study)
A simple HTML page with Javascript to determine all possible sequences represented by IUPAC nucleotide codes
Different prototypes for detecting chemical graph presentation of the molecules into computer-readable format from image, IUPAC name
A collection of bioinformatics and data mining scripts
MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis
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JCAMP-DX file converter for iOS
This Python program serves to extract definitions from the IUPAC key-value store by searching through a JSON file based on user-defined terms. Utilizing Pandas, it generates a table and exports the retrieved definitions into a downloadable CSV format. This tool facilitates easy access to IUPAC scientific terminology.
Collapse a set of redundant kmers to use IUPAC degenerate bases
Add a description, image, and links to the iupac topic page so that developers can more easily learn about it.
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