Source files for building the IDM EMOD disease transmission model.
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Updated
Aug 27, 2024 - C
Source files for building the IDM EMOD disease transmission model.
HIV mdelling project on intersections of risk (FSW) & intervention (ART) heterogeneity based on Eswatini
HIV-64148, an integration of multiple long-read genome assemblers with a pipeline for analysis of HIV-1 genomic data from Oxford Nanopore Sequencing Technology or PacBio Real-Time (SMRT) Sequencing technology.
Point of care system for AMPATH clinics
Package for incidence estimation via recency assays with single time-point cross-sectional data collection
🦠Course project in Bioinformatics Institute 2023-2024
Scripts and outputs for the paper "High risk sexual behavior is linked to changes in gut microbiome and systemic inflammation that lead to HIV-1 infection in men who have sex with men"
Viral Load Sample Management - Machine Interfacing
Code repository for the publication. Contains Monolix and Julia files used for parameter estimation and data analysis, respectively.
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
A web platform providing accessibility to HIV NGS pipelines - Template Consensus Sequence, Drug Resistance, Outgrowth Virus Dating
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
Repository of Meta analysis about NCDs among HIV patients in South Africa
SEEPS: Sequence Evolution and Epidemiological Process Simulator
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
FASTQ-to-CodFreq pipeline for HIV-1 and SARS-CoV-2
Clinical Trial Risk Tool for analysing clinical trial protocols using natural language processing and assessing the risk of ending uninformatively, developed by Fast Data Science
Australian diagnosis and care cascade calculations
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