Infer metadata for your downstream analysis straight from your RNA-seq data
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Updated
Oct 4, 2024 - Python
Infer metadata for your downstream analysis straight from your RNA-seq data
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
vSNP -- validate SNPs
vSNP -- validate SNPs
mSWEEP High-resolution sweep metagenomics using fast probabilistic inference
mGEMS Genomic epidemiology with mixed samples
nim-lang wrapper for https://github.com/38/d4-format
nim wrapper for htslib for parsing genomics data files
Sequence alignment tools
Python library to access Gene Expression Omnibus Database (GEO)
Barcode Generator
ExpoSeq is a pipeline to process and analyze in various visualizations ngs data from phage display campaigns
Comparison of gene usage in immune repertoires under different biological conditions
Find and visualize rearrangements in DNA sequences
All codes about ExMdb data processing
Perl, R, Python, and Bash Shell source codes for high-throughput sequencing (the 2nd, 3rd, and 4th generation sequencing for DNA, RNA, and Protein) data analysis by integrating lots of open-source tools or softwares.
Processing, quality control and analysis of GAM datsets
MSKCC CMO Innovation Lab
VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
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