Automated genomic analysis of SARS-CoV-2 sequence data
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Updated
Jun 29, 2023 - Python
Automated genomic analysis of SARS-CoV-2 sequence data
Screen plasmids for carbapenemase resistance genes, and classify using MOB Suite
A GLUE project developed to support genomic surveillance of Rabies Virus (RABV).
Cluster Investigation & Virus Epidemiology Tool
BA.2.86 project with Sigal lab
Data used for analyses in "Genomic Surveillance Reveals Multiple Introductions of SARS-CoV-2 into Northern California" (Deng et al., Science, 2020) https://doi.org/10.1126/science.abb9263
Gallery for GEViT Project
Official place for proposals and details around monkeypox virus lineage designations
Dr. Buqing Yi
mGEMS Genomic epidemiology with mixed samples
Scripts and data for the CoVaRR-Net Pillar 6 notebook
Data used for analyses in "Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China" (Lu et al., Cell, 2020) https://doi.org/10.1016/j.cell.2020.04.023
Nextstrain build for mpox virus
Pathogen NGS Documentary
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