Visualizing transcript structure and annotation using ggplot2
-
Updated
Aug 24, 2024 - R
Visualizing transcript structure and annotation using ggplot2
A comprehensive microbial genomic analysis pipeline that includes quality control, gene prediction, annotation, and comparative genomic analysis for identifying and visualizing key genetic features in microbial genomes.
Enables Gene Ontology (and other feature annotation) enrichment calculations and comparisons between feature sets.
The post-TOGA processing pipeline
Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes
Linux tool for relative mutation rate of different genes across viral strains.
Python tool for relative mutation rate of different genes across viral strains.
Pipeline for the identification of (coding) gene structures in draft genomes.
A NextFlow pipeline for the annotation of gene homologs using SABAT.
A toolkit for identifying gene homologs in closely related species.
cool BED-to-GFF3 converter that runs in parallel
high-performance BED-to-GTF converter written in Rust
fastest GTF/GFF-to-BED converter chilling around
Structural variant VCF annotation, duplicate removal and comparison
GTF/GFF per gene non-overlapping exon length calculator
A bioinformatics software system designed for comparing gene annotations between different releases for a selected species. It includes Python classes for data processing, information extraction, a MySQL relational database, and web-based interfaces for dynamic data querying.
ncRNA identification, annotation and functional prediction
Nextflow workflow to generate gene track files for HiGlass
Integrative systems analysis identifying the associations between genes and biological process or modules.
Add a description, image, and links to the gene-annotation topic page so that developers can more easily learn about it.
To associate your repository with the gene-annotation topic, visit your repo's landing page and select "manage topics."