gatk
Here are 19 public repositories matching this topic...
Variant calling + processing pipline using GATK based in Snakemake
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May 31, 2018 - Python
An automated tool for processing whole-exome sequencing data
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Apr 21, 2020 - Python
Multi-bAse Codon-Associated variant Re-annotatiON (MACARON)
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May 18, 2020 - Python
🐍🔧 Snakemake wrappers for GATK.
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May 27, 2021 - Python
Collecting Genotypes from ENA and make their SNPs
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Sep 27, 2021 - Python
VariantCaller is a wrapper for the 2022 gatk & bcftools best practices + phasing with WhatsHap.
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Apr 29, 2022 - Python
This Snakemake pipeline implements the GATK best-practices workflow
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Jun 8, 2023 - Python
This repository contains data and code for our analysis of the genome of a Plasmodium falciparum strain with reduced susceptibility to Artemisinin-Based Combination Therapy (ACT) drugs. We performed whole-genome sequencing of the HSOG3 clinical isolate and compared it with a large dataset of global P. falciparum samples.
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Dec 29, 2023 - Python
Snakemake Pipeline for the Analyses of ChIP-seq data in Cancer samples
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Apr 16, 2024 - Python
Reusable and maintained Luigi tasks to incorporate in bioinformatics pipelines
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Aug 19, 2024 - Python
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