An R package for performing STAAR procedure in whole-genome sequencing studies
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Updated
Aug 26, 2024 - C++
An R package for performing STAAR procedure in whole-genome sequencing studies
Source ontology files for the Gene Ontology
Human gene annotations for the oncology domain
This repository hosts the tracker for issues pertaining to GO annotations.
A pipeline for taxonomic classification and functional annotation of metagenomic reads. Based on MEDUSA
ATLAS - Three commands to start analyzing your metagenome data
An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform specie level taxonomic assignments and functional analysis.
An R package for summarizing and visualizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies generated by STAARpipeline
The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVORannotator, STAARpipeline and STAARpipelineSummary
Software for monitoring metagenomes using nanopore sequencing reads
A tool for domain based annotation with databases from the Conserved Domains Database
UniProt Id Mapping through API
An app for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline in UK Biobank RAP
An R package for performing MultiSTAAR procedure in whole-genome sequencing studies
AmiGO is the public interface for the Gene Ontology.
Fast genome-wide functional annotation through orthology assignment
The Gene Ontology Helpdesk
A computational tools for improving the functional annotation of bacterial genomes and the classification of CDSs into cllusters of orthologous groups (COGs). It allows summarizing annotations from different resources to provide a more accurate annotation of genes regarding their assignment into COGs and their categories.
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