for keeping the PAINT GAF files up to date
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Updated
May 9, 2017 - Java
for keeping the PAINT GAF files up to date
This curation tool allows curators to make precise assertions as to when functions were gained and lost during evolution and record the evidence (e.g. experimentally supported GO annotations and phylogenetic information including orthology) for those assertions.
A pipeline to go from raw sequencing data to high quality bins and pretty plots.
A multi-way annotator for genetic elements and genetic variations
A repository for the development of patterns and terms for axiomatisation and refactoring of the GO MF branch
R/Bioconductor package for optimized functional annotation of ChIP-seq data
Tool for integrative gene-based association analysis using GWAS summary stats
Archive of personal scripts repository from my various projects in the Buell Lab at MSU (Jan. 2008 - Apr. 2011)
Adjustment of MAKER's functional annotation scripts
(DEPRECATED) Short form matrix view of all GO annotations for a given gene
Using un-assembled genome sequence data from the Centers for Disease Control and Prevention (CDC) proceed through five distinct stages of analysis and interpretation of that data: 1-genome assembly, 2-gene prediction, 3-functional annotation, 4-comparative genomics and 5-production of a predictive webserver.
Material used for a bioinformatics computer lab course, covering DNA/RNA sequence assembly and analysis, phylogenetic analysis, gene functional annotation, and metagenomic analysis
Material used for a course on transcriptomics, covering transcriptome assembly, transcriptome functional annotation, differential expression analysis, and functional annotation data mining
Python3 extension for DAVID Bioinformatics Tool
Nextcast: a software suite to analyse and model toxicogenomics data
Package for improving the functional annotation of bacterial genomes, classification of protein-coding sequences into clusters of orthologous groups, and visualization of the final annotated genome.
Snakemake pipeline to benchmark 11 functional pathway annotation systems
A back-end functional annotation database for the hg19 reference genome inspired by the FAVOR project.
Analysis workflow to generate fungal assemblies, generate gene structural and functional annotations
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