Watershed for irregular objects
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Updated
Jul 3, 2016 - Java
ImageJ is an open source Java image processing program inspired by NIH Image.
It runs on any computer with a Java 1.8 or later virtual machine.
Downloadable distributions are available for Windows, Mac OS X and Linux.
ImageJ has a strong, established user base, with thousands of plugins and macros for performing a wide variety of tasks.
Fiji is a "batteries-included" distribution of ImageJ, bundling many plugins which facilitate scientific image analysis.
Watershed for irregular objects
ImageJ macros and plugins.
An ImageJ/Fiji port of Leif Jonsson's pure Java t-SNE (https://github.com/lejon/T-SNE-Java)
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Analyze_Blebs is a semi-automated ImageJ/FIJI-based plugin for analysis of blebbing cells designed for users at all experience levels and blebs of all types.
Virtual Orientation Tool FIJI (VOTj) : A Fiji plugin for object centering and alignment
ImageJ Plugin for Automated Cancer Cell Vessel Co-option Analysis
ObjCounter ImageJ plugin for object segmentation and counting
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FIJI plugin for the averaging of ND (2/3/4D) images
Java implementation of a proprietary image transfer protocol
This is a Java-based plugin for quantification of mitochondrial characteristics and subsequent morphology operational under either ImageJ or Fiji.
Automated tracking and interactive visualization/simulation of select cellular processes
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GitHub Repository which is used as a Maven Repository