A repository containing ImageJ macros for the Snyder Lab
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Updated
May 10, 2019 - Python
A repository containing ImageJ macros for the Snyder Lab
A simple ImageJ Fiji macro to apply maths to every nth slice in a single-channel image, e.g. average every 5 frames and similar.
An ImageJ macro for 2D colocalization of IHC signals in ImageJ and counting RNAscope puncta within cells.
Useful scripts for saving multichannel fluorescence images for use in figures and saving relevant metadata
A simple macro to analysis spheroid areas
R-Scripts and Fiji-macro used for the construction of kymographs based on fluorescence profiles
This is a full macro for images analysis, cell count and co-staining cell count. Different options are available to analyse your image. You can count co-staining cell in unlimited number of images. the counting is done by size. There is an option to batch image analysis to save some time. You can personnalize the code and the analysis to maximiz…
ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)
ImageJ macro for normalization of time lapse images against a reference image
ImageJ macros and plugins.
Fiji macro that splits and merges multi-dimensional TIFFs.
Compilation of ImageJ macros to do a wide variety of functions.
The MRI workshop about ImageJ macro programming.
FIJI macros for Enrichment Analysis
Stereological macros for ImageJ
Set of ImageJ (FIJI) macros to import raw TIF images of time series Calcium imaging recordings, correct for photo-bleaching, identify regions of highest fluorescence change to assist in ROI placement, and calculate deltaF/F as a function of time for each ROI. Please cite Caccavano et. al. bioRxiv 2020.
Versatile Fiji-imagej macro for 2D quantification of each marker inside your immunofluorescence staining in less of 1 minute per image. Control critical steps for segmentation.
Collection of macros for image processing in Fiji/ImageJ
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