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Aug 15, 2024 - MATLAB
enzyme-constraints
Here are 12 public repositories matching this topic...
Toolbox for including enzyme constraints on a genome-scale model.
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Aug 27, 2024 - MATLAB
GitHub repository to support the development of the thesis "Development of microbial community simulation methods to characterize and analyze the effects of metal concentrations on pathogen silencing/promotion".
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Jan 30, 2024 - Jupyter Notebook
Enzyme-constrained genome-scale models in python
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Oct 25, 2023 - Python
KMG060 Systems Biology course - repo for students
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Sep 23, 2023 - MATLAB
Impose constraints on enzyme abundances ratios in enzyme-constraint metabolic models
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Sep 18, 2023 - MATLAB
Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic models (ecGEMs) reconstruction
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Jul 4, 2023 - Python
Code and data for in silico strain design for enhanced production of +100 typical bio-products with yeast as a cell-factory. Predictions are based on the ecYeastGEM model avaiable at ecModels.
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Mar 28, 2023 - MATLAB
PRESTO: Correction of turnover numbers in enzyme-constraint metabolic models
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Mar 24, 2023 - MATLAB
A constraint-based method for prediction of metabolic engineering targets using ecModels of metabolism
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Mar 14, 2023 - MATLAB
Collection of scripts for reproduction of simulation results in "Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0".
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Jun 9, 2022 - MATLAB
Collection of scripts for enhancing humanGEM based models with kinetic and proteomics constraints and specialized simulation utilities.
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Feb 16, 2020 - MATLAB
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