Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
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Updated
Jul 25, 2024 - Python
Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
Generate a rich feature space describing all possible mutations in a given protein sequence (+ structure)
A GLUE project for hepatitis B virus (HBV).
A GLUE project for Hepatitis C virus (HCV)
A method to predict activating, deactivating and resistance mutations in kinases
Clusters phosphoproteomics data based on a combination of the sequence information and abundance changes over conditions.
Drug Response Estimation from single-cell Expression Profiles
Multipurpose tool for targeted variant calling of genetic polymorphisms in Mycobacterium Tuberculosis
Compartmental model projecting cases, resistant cases, and deaths averted in Africa from 2021-2030 with a vaccine similar to RTS,S.
This repository is for ER+ breast cancer scRNA-seq data processing and figure generation.
Snakemake pipelines to run the analysis for the Illumina vs. Nanopore comparison.
This study assessed the spatial genetic variation in P. falciparum populations in Mali
Web application for HBV-GLUE
Personalised scoring system for lung cancer patients that enables ranking of the activated interventional nodes.
Minor Variant Calling and Phasing Tools
The SNP and gene datasets of M. Tuberculosis for drug resistance prediction.
HCV drug resistance extension based on collaboration with PHE.
Flexible and disposable paper and plastic-based gel micropads for nematode handling, imaging and chemical testing
Data and analysis scripts used in Predicting resistance of clinical Abl mutations to targeted kinase inhibitors using alchemical free-energy calculations
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