Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
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Updated
Jul 25, 2024 - Python
Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
Minor Variant Calling and Phasing Tools
Snakemake pipelines to run the analysis for the Illumina vs. Nanopore comparison.
Personalised scoring system for lung cancer patients that enables ranking of the activated interventional nodes.
Clusters phosphoproteomics data based on a combination of the sequence information and abundance changes over conditions.
Generate a rich feature space describing all possible mutations in a given protein sequence (+ structure)
A GLUE project for hepatitis B virus (HBV).
This study assessed the spatial genetic variation in P. falciparum populations in Mali
Flexible and disposable paper and plastic-based gel micropads for nematode handling, imaging and chemical testing
The SNP and gene datasets of M. Tuberculosis for drug resistance prediction.
HCV drug resistance extension based on collaboration with PHE.
Web application for HBV-GLUE
Compartmental model projecting cases, resistant cases, and deaths averted in Africa from 2021-2030 with a vaccine similar to RTS,S.
Examine treatment outcomes, and predict the incidence of Tuberculosis
Multipurpose tool for targeted variant calling of genetic polymorphisms in Mycobacterium Tuberculosis
A GLUE project for Hepatitis C virus (HCV)
This repository is for ER+ breast cancer scRNA-seq data processing and figure generation.
Data and analysis scripts used in Predicting resistance of clinical Abl mutations to targeted kinase inhibitors using alchemical free-energy calculations
The modeling code used for Manole et al, Canc Res, 2016.
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