deseq2
Here are 93 public repositories matching this topic...
Differential Gene Expression analysis in R using DESeq2
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May 3, 2024 - HTML
Iteratively randomly pooling scRNA-seq expressing a given gene from different numbers of cells and running DESeq2 with fdrtools correction to determine how many times which genes come out as enriched with said gene
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Nov 9, 2018 - Python
Code and scripts for the RNA-seq analysis of project: Deciphering the cellular roles and dissecting functional regions of UPF3A and UPF3B in human NMD
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Dec 3, 2021 - R
Performing RNA-Seq data analysis and quality control using DESeq2 in R.
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Jun 9, 2023 - R
Simple Nextflow RNA-Seq pipeline
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Jan 24, 2024 - Nextflow
Differential expression analysis: DESeq2, edgeR, limma. Realized in python based on rpy2
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May 7, 2021 - Jupyter Notebook
SBC analysis with DIGIST
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Apr 13, 2023 - R
R workflows used to analyze microbial community sequence data
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Apr 21, 2021 - R
Workflow to simulate an RNA-seq reads and perform DE-analysis
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Apr 29, 2021 - Python
Part of the final project for an Intro to Bioinformatics graduate course. Using RStudio I ran DESeq2 to show differentially expressed genes between control mice and mice infected with RSV.
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Mar 21, 2023
Public repo for the recount Bioconductor workflow that is visible at http://bioconductor.org/help/workflows/
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May 21, 2024 - TeX
Tuberculosis and the microbiome
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Feb 18, 2021 - HTML
Repository miscellaneous R scripts including scripts for RNAseq analysis
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Aug 6, 2021 - Jupyter Notebook
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Jul 5, 2021 - HTML
A collection of Jupyter notebooks for basic analysis of the data from the "BeatAML" study by Tyner et al. (2018)
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Jul 19, 2023 - Jupyter Notebook
A R shiny dashboard of differential expression in human embryonic stem cells.
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Apr 6, 2023 - R
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