Bioinformatic software to identify causal variants in GWAS and GWAS/eQTL studies.
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Updated
Dec 11, 2017 - C++
Bioinformatic software to identify causal variants in GWAS and GWAS/eQTL studies.
Analyses for the publication titled "Integrating disease and drug-related phenotypes for improved identification of pharmacogenomic variants"
Image processing desktop GUI tool to automate colocalization analysis across multiple channels on a fluorescence image
ImageJ scripts for analyzing nuclei intensity and overlap in brain sections
Colocalization metrics and distances for images or their sparse representations.
Preprocess, noise-reduction, threshold & quantify images to get box plots for each class (mainly cell cultures of different cel llines). Colocalization due to a naive trick of counting all overlapping signals/pixels. Could be done in ImageJ as well, but i thought this is better suited than fiddling with macros.
Code for the PeerJ paper (colocr: an R package for conducting co-localization analysis on fluorescence microscopy images)
Colocalization analysis of Meconium Ileus Genome-Wide Association Study (GWAS) (Gong et al., 2019) signal around SLC26A9 with spirometry association analysis in the UK Biobank and Spirometa Consortium (Shrine et., 2019) around the same region to elucidate whether there is a shared genetic contribution to disease
A shiny app for conducting co-localization analysis.
Methylation and mqtl analysis of the developing knee
This is a fork from qqman package
Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).
An automated tool for Object-based colocalization in fluorescence microscopy images.
echoverse module: Locus plot creation for fine-mapping and colocalization studies.
An ImageJ macro for 2D colocalization of IHC signals in ImageJ and counting RNAscope puncta within cells.
🧬High-performance genetics- and genomics-related data visualization using Makie.jl
An R package for conducting co-localization analysis. Edit
Colocalization analysis of genetic association signals
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