Sample Analysis for diffloop paper
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Updated
Sep 23, 2017 - HTML
Sample Analysis for diffloop paper
This is the code for the chromatin packing model in macrogenomics engineering study
Statistical Modeling of ChIA-PET interactions
ChIP-seq normalization according to background reads density. (R package)
Make a phylogeny using the chromatin structure information extracted from Hi-C experiments (mirror of the original repo)
🖥️📚 WorkflowR site containing code and analyses produced throghout my PhD thesis.
Super-resolution chromatin tracing 2018
Bioinformatic tools (R scripts) for the analysis of Absolute Quantification of Architecture (AQuA-HiChIP) style data.
chromhmmData: Chromosome Size, Coordinates and Anchor Files
HiSIF: Genome-wide chromatin interactions identify characteristic promoter-distal loops
3D Genome Browser
A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
CUT&RUN and CUT&Tag data processing and analysis
Using chromatin-chromatin interaction scores generated by the Capture Hi-C technology, I developed this R code during my six week internship in the Spicuglia lab, part of the INSERM institute (TAGC) related to the Aix-Marseille University, France, in order to identify the DNA interactions happening between different regions, specifically the int…
Multi Resolution Analysis of Tiling Arrays. (R package)
Processing, quality control and analysis of GAM datsets
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