bedtools
Here are 28 public repositories matching this topic...
Predicting Tissue Specific Enhancer Activity from Epigenetic Marks and Sequence
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Dec 3, 2014 - Python
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May 22, 2017 - Shell
bedtools environment containerized for singularity
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May 22, 2018 - Shell
Sequencing data preprocessing
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Jun 18, 2018 - R
Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores and annotations from popular disease databases. Seave stores genomic variation of all types and sizes, and allows filtering for specific inheritance patterns, quality values, allele frequencies and gene lists. …
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Aug 9, 2018 - HTML
program to make bed12 files from bed 6 files based on the name col of the bed6 file.
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Apr 8, 2019 - Shell
Various bioinformatics tools in one package
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Jan 29, 2020 - Python
bionano annovar annotation
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Jul 28, 2020 - Perl
Get exons from a transcriptome and raw genomic reads using abyss-bloom and bedtools
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Jul 28, 2020 - Python
Python Library for data analysis based on GMQL
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Dec 1, 2021 - Python
Useful NGS utilities for everyday use in the form of stand-alone tool.
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Dec 2, 2022 - Java
A beginner’s guide to Bioinformatics
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Mar 2, 2023
Intervene: a tool for intersection and visualization of multiple genomic region and gene sets
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Oct 28, 2023 - Python
Assembly of RNA transcriptome, differential expression analysis, identification of lncRNA candidates based on genomic context and protein coding potential.
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Feb 9, 2024 - Shell
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